RNA id: AMCG00003992


Basic Information

Item Value
RNA id AMCG00003992
length 2041
RNA type mRNA
GC content 0.47
exon number 2
gene id AMCG00003992
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28587831 ~ 28591593 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAACCGCGTTTGCAGATTCATGGTGTTTAAATCCCCCCGAAGCCCAGAGCCCTGGCGCTGTTCCGCCCGGTGCGACGCCGGCGGGATGGGTGTCGGGGTTGTGGACGGGCTGCTGTGGATGGCTAGCTGCGGAGAGGTTGACCACACACTGAACATGCTTCCCTCTAATAGGAAGGGGAATGAGCCCTGTTCAAGTACATCCCCTGCCCTTTCAGTCCCCGAATGTGCCATATGCTTACAAACCTGCGTTCATCCCGTCAGACTCCCTTGCAGGCACATCTTTTGCTACCTTTGTGTAAAAGGAGCATCATGGCAAAGCAAGCGCTGTGCTCTGTGCCGGCAAGAGATCCCTGAAGACTTTCTGGAGAAGCCCACCCTGCTGTCTCCCGAGGATCTCAAGGCCGCAGGCAGAGGAAACGGGGAGTACGCCTGGTACTATGAGGGTAGGAACGGCTGGTGGCAGTACGACGAGCGCACCAGCAGGGAGTTAGAAGACGCTTTCTCCAAGGGCAAAAAGACTACAGAGATGCTCATAGCCGGGTTTTTGTACGTGGCAGACTTGGAGAACATGGTTCAGTACAGAAGGAATGAACACGGTCGGCgcagaaaaatgaaaagggacATTGTAGATATTCCCAAGAAAGGTGTAGCCGGCCTTCGATTGGACACTGACTCCAGTGCTGTAGCTGTGGCCCGTGAAAATTCAGCGGACGGGGCCGATACCGCTGTAGTTCAGGGGGCTGCCGCTGCGTCCACacgtgctgctgctgctgtgaggCCCCCTACGTCTCTAGGAGGCCAGCCCACGAGCCCTTCATCCCCATCCCCTGATGCCAGCAGTTCCCTAGAGGACTCCTTTGCCCAACTCCAGATTAACAACCAAAGTGGGGTGGACAGAGGACGCaatggagagggggaggaggtggaggaggatgCAGTCCTGTCCCGTGGGTCCTCTGCTCACAACACCTCCGTGGATGAGTCAGAATCTGAGAGCAGcagtgaggaggaagaggaggaagctgAGGACGATGTAAGCGAAGTAACTGGTGAGCAGCCACAGCACGTCTTGACTACCAGGCAAAGACTGCATCAGCACGACAGGTTTAGGGAGAACCAGGCAGACAGGCCTGCTccaggaggagaaccaggcaaCAACAGCAACGGCGTGAGATCAAGGAGACCTGATGGACAGTGTACAGTGACTGAagtttaaattgcaaattgtaCTGGAATGGGAGCTGAGATTATCAGCCAGTATTGCACTTGGAACTAAAGCGTTTCTAATTGCTACCTTTATTTAGAAATCTGAAGGGCACTCTCATAattcaaaaagtgaaaaataaagaaaactataaGGCCTAATGCAGAACACCAAATTTTAATAATGTAGCTTGTCTTCACAACATACAGAGGGCTGTTTTTGTCCACTATTTGGTTATAATAGACTCTTGCTgtctaaaattaatatttaaagtcaCCCTTTTTCCCCATTGAAGCCCAAGTCAATATTCTGAATTGGTGTGTTTCATAAACGGAGCATGGTCTTTCGGTgttaaattcatatttcattGTAATATGCTTGTCTGTATCATTACTTGTGCATGTGTTGTTGTAAGAGAGGGTACTAAACGCTAATGACAGAAAGATCAAGAGTTTTGGTTTTAGAATTAGATTGGTTAACTTTATTGGAGTCTTAAACTCAGCTTTCTTGTAATTGGCAGACCAGTGTTTGCTAAATGATGAGATAAAAGATCTGTACAGTCTGCTTATCTGAAACATGGGTTGTCTTTTCTGCATTGCAAAGTTTTCAGTGTAATGATTTTTACGGTTCTTACGAAATGTCATTGTCACTCGCCCCTGCCATTCTAGTCTCTCAGTCggttttaaaacataacattttttttttgctgtattttgctttattgtaatattttgttactttattttaaatttacaaatcTTGTATTTGTCAATTTATCAACCCAAATAACAAGTTTCCTAGCATCTGTAAgctgtgattttgaaatgtgcta

Function

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0072572 poly-ADP-D-ribose binding molecular_function

KEGG:

id description
K15700 RNF146; E3 ubiquitin-protein ligase RNF146

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6014 lncRNA upstream 10897 28568184 ~ 28576934 (+) False AMCG00003991
TU6007 lncRNA upstream 118887 28466917 ~ 28468944 (+) True G4917
TU6005 lncRNA upstream 122981 28454433 ~ 28464850 (+) False AMCG00003990
TU5991 lncRNA upstream 188143 28398863 ~ 28399688 (+) False AMCG00003988
TU5905 lncRNA upstream 482124 28104210 ~ 28105707 (+) True G4837
TU6060 lncRNA downstream 72909 28664502 ~ 28664710 (+) False AMCG00003993
TU6083 lncRNA downstream 301091 28892684 ~ 28893031 (+) True G4981
TU6107 lncRNA downstream 360960 28952553 ~ 28953065 (+) True G5005
TU6212 lncRNA downstream 762928 29354521 ~ 29361679 (+) True G5085
TU6230 lncRNA downstream 947620 29539213 ~ 29541316 (+) False AMCG00004011
AMCG00003991 mRNA upstream 2157 28568825 ~ 28585674 (+) True AMCG00003991
AMCG00003990 mRNA upstream 122185 28454419 ~ 28465646 (+) True AMCG00003990
AMCG00003988 mRNA upstream 188090 28379811 ~ 28399741 (+) True AMCG00003988
AMCG00003989 mRNA upstream 208658 28373146 ~ 28379173 (+) True AMCG00003989
AMCG00003985 mRNA upstream 217857 28354515 ~ 28369974 (+) True AMCG00003985
AMCG00003993 mRNA downstream 48581 28640174 ~ 28683981 (+) True AMCG00003993
AMCG00003994 mRNA downstream 98295 28689888 ~ 28698767 (+) True AMCG00003994
AMCG00003998 mRNA downstream 126189 28717782 ~ 28731033 (+) True AMCG00003998
AMCG00003999 mRNA downstream 140316 28731909 ~ 28751998 (+) True AMCG00003999
AMCG00004003 mRNA downstream 490500 29082093 ~ 29108404 (+) True AMCG00004003
TU5898 other upstream 484620 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 520045 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 2792040 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 3903911 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 4874697 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 1679617 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 2296402 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 4538527 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 6261270 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 7160940 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile