RNA id: TU6060


Basic Information

Item Value
RNA id TU6060
length 209
lncRNA type sense_over
GC content 0.58
exon number 1
gene id AMCG00003993
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28640174 ~ 28683981 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGACACTGGCCTGTTTCTGACAGTCCATTGCAAGTCTGGCTATGCAAAGCTACCAGAGGACGTCCTTGTGCTCTTCCGAACAGTGTCTCTGTCAGCGCCCGACCACAGCATGATTCTTAGGGGAAATCTCACCGCTCTGGGGTTCAAGAGCCCTAAAATGCTTACTCACCAGCTGCAGCTTGTAACCCAACTCGTCCAAGAGCAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6014 lncRNA upstream 87568 28568184 ~ 28576934 (+) False AMCG00003991
TU6007 lncRNA upstream 195558 28466917 ~ 28468944 (+) True G4917
TU6005 lncRNA upstream 199652 28454433 ~ 28464850 (+) False AMCG00003990
TU5991 lncRNA upstream 264814 28398863 ~ 28399688 (+) False AMCG00003988
TU5905 lncRNA upstream 558795 28104210 ~ 28105707 (+) True G4837
TU6083 lncRNA downstream 227974 28892684 ~ 28893031 (+) True G4981
TU6107 lncRNA downstream 287843 28952553 ~ 28953065 (+) True G5005
TU6212 lncRNA downstream 689811 29354521 ~ 29361679 (+) True G5085
TU6230 lncRNA downstream 874503 29539213 ~ 29541316 (+) False AMCG00004011
TU6278 lncRNA downstream 1019517 29684227 ~ 29685543 (+) True G5129
AMCG00003992 mRNA upstream 72909 28587831 ~ 28591593 (+) True AMCG00003992
AMCG00003991 mRNA upstream 78828 28568825 ~ 28585674 (+) True AMCG00003991
AMCG00003990 mRNA upstream 198856 28454419 ~ 28465646 (+) True AMCG00003990
AMCG00003988 mRNA upstream 264761 28379811 ~ 28399741 (+) True AMCG00003988
AMCG00003989 mRNA upstream 285329 28373146 ~ 28379173 (+) True AMCG00003989
AMCG00003994 mRNA downstream 25178 28689888 ~ 28698767 (+) True AMCG00003994
AMCG00003998 mRNA downstream 53072 28717782 ~ 28731033 (+) True AMCG00003998
AMCG00003999 mRNA downstream 67199 28731909 ~ 28751998 (+) True AMCG00003999
AMCG00004003 mRNA downstream 417383 29082093 ~ 29108404 (+) True AMCG00004003
AMCG00004009 mRNA downstream 478052 29142762 ~ 29184704 (+) True AMCG00004009
TU5898 other upstream 561291 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 596716 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 2868711 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 3980582 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 4951368 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 1606500 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 2223285 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 4465410 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 6188153 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 7087823 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile