RNA id: AMCG00003994


Basic Information

Item Value
RNA id AMCG00003994
length 2700
RNA type mRNA
GC content 0.50
exon number 17
gene id AMCG00003994
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28689888 ~ 28698767 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTGTTTAGAGAACATGGAGGACCTTCAGATGGTGGAGGAGAAGATACTGCAGTGCTTGTCTGGGGAGTGTACTCTGCTCCAAAGCTTGGCTATAAACAGGTCACTAAGTGACCTAAAAAAGCACTACGACGAAGCTTTAGCTAAAAAGTTCAAGCTTGCTGAATTAGAAAAGTCTACCCTAGCTGCTAGAGAAGGGTTCAGACTCATTGCAGACAGAGCAGCATTGATGTTCAATCTGTCCAATACAATGAGACAAGTGAACCCTGTGTACCACATCAGTTTTGACCAGCTTCTGGAGGTTTTCAGTGCTGCCATTGTTCATTCAGAGAGATACTCTATCAAGACTCTAGTTGAACGTATAACATATAACTTATTTTGTTACATTGGCAAGTATATAATGGAAAGAGACCAGATGGTGTATACCCTGCTTTTAGCATTGGAAATTGAAAGCTGTCTGGGCCACGTAACCCCAGGCATGATCGAGTTCCTCATTTGTCCAGACCTCTGTGTGGCAGTGATGGAGGCCATGCAAGCAAAGCCTTCAGAAGCCAGGCAGCACGCAAAGAATCCATTTGAGTGGATGACTGAAGAgcagtttaaaaatgtgcagATTCTGGCTACATATTACAGCTGGTTCCACAACCTTTTTGATCGGATGTATAAGGATGGCAAGGACATGAGTTGGAAGTCTCTGTGTGACAGCGATCAGCCAGAGAACACAGCGAAGGCGAAGGGCCCAGAAGGGCTCGGTGGTCTGGGTCCGCTGCAGCGTCTCCTGGTCATCCGGGCGATCCGCAGCGACAGGCTGACGCAGGCAGCATCGCTCTACATCAGCAGCGTTCTTGGAAAGAAATACGTCACAGAGATCCCATCCGATCTTCAGGCCTGTTTACAGCTGACAAAACCCCAGACTCCTATTCTGCTGCTCTACAGCTCTGAGGCCGATGAGCCCCGCAGGCAGATCCTGGAGCTCTCTGCTCGAAGGGGGTGTGAGACTCAGGTTGTGTCTGTCAATGGTGGGAGTATCAGTGAAGAGAGGAGGATAAGATATTTGATTGAAGAAAGCCAGGCCAAGGGACGCTGGCTTTTACTGGAGAACATCCATAATTCACAGCCCCTGATGACCTCAGTCGAATGCCTGCTGCTTGCAAACAAGAGCCCAGACAGACATTTCCGCCTGTGGATTTCGGCTCAAGTCATCAGTAATGTACCAGTGCAGCTCCTGCATGCGTCACTGCGAATTATTACAGATACACCGAAGAATATGAAAGATGCCATGGTGAGGTGCATGCAGCAGGTATGCTCAGACACATTGCACAGCAGCGGCCGTCCCGAATGGCCAGCCCTCATCCATAACCTGTGCTATGTGCACTGCGCTGTGCGGCTCCGGGCGAGCTCTGGGGGTCCCACAGGATGGAACTGCAGAGACGCCATGATGTTTGGAATCCAAGACTTCAGAgaTGCTTTGCAAGTGTTAACAGAAGAATTCAGAGACCGGTCTGCAGAAGCAGAGGGGAGGAGCATTTCTTGGACCGGGATTCGGTATCTCCTATCGGAAGTAATTTAtgggaaaaatataattgatgaCTGCGATAAGAAAAGTCTGGCAtcattgtttgatttgtggATCAGTTCTACTGCCACCAAGAAAGATTATGACATGACAAAATTGAGATACAGGATCCCTGCTGCCTTCTTCGACCCTGACCTGCAGTTGAACAACCTTTTGCAGGCCCTAGACTGCATCCCTCGCCATGCATTGGATGTCCCTGAGGGTGTCAGCATGCACTCCACTCCAGAACTCCACTTTGGAGATGAGAAGTATGTTTATAGTTGGTTACAAACCCTCTATGACTCCTTTTTGTTCCACCAGCAGCAGCACTCCTTGGCAATTCAAAAACATCACAGGAATTTCCTAATTAAATCCAACAAAGATCAGGAAGTGTGGGAGATTTGCTACAATATCTTGGCTAAACTTCCTAAAGGATGGAGCAAGgcCATCAGGAACAGCACTGAGTGTCTGCTCACACTGGGGGACAGCCTGACGGTGACGGAGCTCTCAGTCGCTCGGGACCTCTCTCAGCAGCGAGTCCCCTCACACTGGAGCAGCCTGGCAGGCATGGGCTCTCCTCCTGAGCTCTGGACAGCAGCCACGTGGATCAGGGACCTGCAGCAACGAACTTCCCACTTTGAAAAGATTCTGCAGCTTGGTCAAGAAAAGATGCCAACATACTGGCTCAGTGCCTTTAAGAATCCCAGGGGGCTGTTGGGGGTGTTCAGACAGCAGAGCGTCCGGAAACACGCAGAGCAGTCGAGCTTCACGGAGCCCATGGAGTTTCACACCATGATCACACAGAGAGATAAAGACCATATCCGGGATCCTCCCCAGGAGGGCATGTTTGTGTACGGGATCCATGTGTGGGGCGTCTCCTGGCACAAGACGGAGGCGGAGCTGCTAGATGCCCCTCCCAGACATGGCCCAGTCTGCCTGCCAGTCATTCACCTGCAGTGTCTTCCCAGGTCAGAGAAAGCCAGCCTCACAGAATCCATGAGAAGCTTCGATTCGTATCAGTGCCCTGTGTACAGCTCATTCACAGGAGCCCGTGAGCCAGTCCTGCATCTCGACATTCACAAAGACAACATCCCCGCATCGAGGTGGGCACTGCGGGGGATGAAGGCAACACTGCAGCCATTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6060 lncRNA upstream 25178 28664502 ~ 28664710 (+) False AMCG00003993
TU6014 lncRNA upstream 112954 28568184 ~ 28576934 (+) False AMCG00003991
TU6007 lncRNA upstream 220944 28466917 ~ 28468944 (+) True G4917
TU6005 lncRNA upstream 225038 28454433 ~ 28464850 (+) False AMCG00003990
TU5991 lncRNA upstream 290200 28398863 ~ 28399688 (+) False AMCG00003988
TU6083 lncRNA downstream 193917 28892684 ~ 28893031 (+) True G4981
TU6107 lncRNA downstream 253786 28952553 ~ 28953065 (+) True G5005
TU6212 lncRNA downstream 655754 29354521 ~ 29361679 (+) True G5085
TU6230 lncRNA downstream 840446 29539213 ~ 29541316 (+) False AMCG00004011
TU6278 lncRNA downstream 985460 29684227 ~ 29685543 (+) True G5129
AMCG00003993 mRNA upstream 5907 28640174 ~ 28683981 (+) True AMCG00003993
AMCG00003992 mRNA upstream 98295 28587831 ~ 28591593 (+) True AMCG00003992
AMCG00003991 mRNA upstream 104214 28568825 ~ 28585674 (+) True AMCG00003991
AMCG00003990 mRNA upstream 224242 28454419 ~ 28465646 (+) True AMCG00003990
AMCG00003988 mRNA upstream 290147 28379811 ~ 28399741 (+) True AMCG00003988
AMCG00003998 mRNA downstream 19015 28717782 ~ 28731033 (+) True AMCG00003998
AMCG00003999 mRNA downstream 33142 28731909 ~ 28751998 (+) True AMCG00003999
AMCG00004003 mRNA downstream 383326 29082093 ~ 29108404 (+) True AMCG00004003
AMCG00004009 mRNA downstream 443995 29142762 ~ 29184704 (+) True AMCG00004009
AMCG00004007 mRNA downstream 561193 29259960 ~ 29265240 (+) True AMCG00004007
TU5898 other upstream 586677 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 622102 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 2894097 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 4005968 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 4976754 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 1572443 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 2189228 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 4431353 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 6154096 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 7053766 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile