RNA id: AMCG00003998



Basic Information


Item Value
RNA id AMCG00003998
length 2878
RNA type mRNA
GC content 0.42
exon number 19
gene id AMCG00003998
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28717782 ~ 28731033 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCGGGATTGGCGGAAGTGGCGAAATTTGAAAGTGCAGAGGAACAAAACAGTTGTCGGAAGGGATTGATGCGGTTTTATGTGGTCTTACGCTGAGAAAAACTAAGCAATTGTTACATAAAGTGGATTTGCAaCATGGAAGATGACCAGCATTCGGACAGGCAAATGCAGCTTGCCCTGCTGTCTCAGAAACTGaagcacattaaattaaaatactgcacTGACGATAATACGGACAACATGAAGCAGATTTTAAGTTCCAGCTCTCCTGAATCCTGTTTAGCATATTTAATGAATGCTGAGAAGAGAGGCAACCCTAATACTGATTCCAGTCTTCTCAAAAAACTGATGGACCGCTACACTCTGGCGTTTTCTTATCTCCCGGTGGAAAAGCACAGTCAAAATGAAAGCTATGCAAGGATGCTGGTCAGGTTTGCAGAACTGAGAGCcattCAAGATCCAGATGAGGCACATGATGACTTCAATATGGCTAGAATCAACAGCAAGAGTTTTGCCTTTGTGCACATTGCACATGCACAGTTCGAGTTGTCGCAAGGCAACATAAAGAAAAGTACTTCAATACTACAGAAGgcatttgaattaaatgctAGACCCACTGAACTTCTGGAGGTGGCGATGCAGAATTTAAAATCTGGGAAAGCTCAACTGCAGTCACCAAATGATAAAGAGAATATGATTGTGCCGTCGGTTTACGGTGTGCAAGAGTCCAATAAAAACAGCCTGGAATTTCCAAAACTCAGTCATAACCGTGACAGCACCGGAGATTTACAGCTGAGCAGTTCCTTCTGCTCTCAAGGCCCTGAAAACCGCTTCTGGGAGGAGCCTGGAACTGCCGAGTCAACTGTGACTCTGTTGAACAGAGTGCATGAAAAGGCTACTTCTGCCACAGAAGGCACTCCATCCCAAGTTCTGACTTGTTCCGATAATGTGAGGGAGAAAGCGGAGTCAAAccagtttaaaatgtcttcgCATTTGGAGCAATGTAAATCCGTGTATAAAGAACCTTCTTCAGAATGGAAAATACCAGCACGGATAACTAGACCCATCTCCCCTGAGAACAAGCAGTCACCAACAGAACAAGCACAACCACAAGCTCAAAACCCCATTTTTGGATCATCCAGAAGGAATTTCTTTGAAACACCAAACTATAAAATGTCTGGCAAGAATACAAACAGcgTTGTTACTCCAGTTTTAAATAAAGACCCTCCAGCAATGGCACAGATCTCAACACCTTACAATTATGGGTCATTTCCGCACCCAGGTCAAGTACAGCAACCCTTCACCCCTTTCAGCCAGACACCCCAGGGTCCTGCTTCTGCCTTCTCTAATGAATCAATCACAATTAAAGGGAGAACCTACTTCATACTCAAGCAAATAGGCAGAGGTGGCTCCAGTAAGgtGTTCCAAGTTCTGGACCACAAGAAACAGCTGTTTGCTGTTAAATACGTGAATCTGGAGGAAGCAGACAGCCAAACCATTGAGAGTTACAGAAATGAGATTGAGCATCTCAATCATCTACAGCAGAACAGTGATCAGATTATAAAGCTTTATGACTAtgagATGACGAACAGCTATATCTACATGCTCATGGAGTGTGGCAATCTTGACCTAAATACTTGGCTAAGAAGCCGAAAATCTGTCAACCCCCTGGAGAGAAAGTTCTATTGGCGAAACATGTTGGAAGCTGTGCAAACTATCCATCAACACGGAATCATCCACAGTGACTTGAAACCAGCTAATTTTGTCATCGTAAACGCGTCACTGAAACTCATTGACTTTGGCATTGCCAACCACATTCAACCTGATGTAACCAGTATAGTGAAGGATTCACAGGTTGGAACTCTCAATTACATGCCACCTGAAGCCATTAAAGACCCTTCATCATTTGGAGGAAAACCAAGGTCCAAGATCAGTCCTAAAAGTGATGTTTGGTCACTTGGATGTATTCTGTACTGCATGACGTATGGAAAAACTCCGTTCCAGCACATTACCAACCAGATCACGAAACTACAGGCCATCATTGATCCTTCCTGTGACATTGAGTTTCcagacatttcagaaaaagaCCTCCAAGATGTGTTAAGgAGGTGTTTGGTACGCAACCCAAAGGAAAGAATCTCCATTGCAGAACTTCTTGAGCATCCATACCTGCAGCTGCAACAACAACGGCAGCCAGAGCCAGCTCAGTTCAACAATCAAGATTTGAAGCGTATCTTCAGTGAGCTTGCAGCTTTAAATTCCCCACGCAGCATTTCCAGAGCCGCTAATAACTTGGCAAGGATGTGCAACAGTGGGCAAAAGCTTGATCTCTCGGAGTGTGTAAAACCATCTGGCCTCCCTCCTTGGAAGATTTAAAGcaatatgttttttcattgctttataGAAAATATTCTGTAAATATTCTGCTGTTTTGAAACTTCGAGTAATCCTTCCACAGAAAGAATTAAGATGAAGCTCCTTTTTGGACTACATATAACAAAGGACCATTACTGTGTTAATctggaaaaaagtattataaatgttttgtcatactttcGATATTTGACCACTATGGCACCCAATGCGTTTTAGTATAAATGTTCTTCtgtcaaataaaaagaaatggcaacatcttttaataaccttttttgtttgttcaagaTTTGATGATGCAGGGGGACAAATGAACTAATGTACTGTCTAGAGAAAGTGAACGTATTTGTAGAGAGCTGAATATAaacctgtaattaaaatatggCTTTTctaagaattacattttacttttgaaaactGATGTGGGAATTCTGACATTCAATTCAATTGAATAGCTATCTTAAAGTGGTCTTTAAGACGATTTTGGGTCTTTACTGATATGACTTGC

Function


GO: NA

KEGG:

id description
K08866 TTK, MPS1; serine/threonine-protein kinase TTK/MPS1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU6060 lncRNA upstream 53072 28664502 ~ 28664710 (+) False AMCG00003993
TU6014 lncRNA upstream 140848 28568184 ~ 28576934 (+) False AMCG00003991
TU6007 lncRNA upstream 248838 28466917 ~ 28468944 (+) True G4917
TU6005 lncRNA upstream 252932 28454433 ~ 28464850 (+) False AMCG00003990
TU5991 lncRNA upstream 318094 28398863 ~ 28399688 (+) False AMCG00003988
TU6083 lncRNA downstream 161651 28892684 ~ 28893031 (+) True G4981
TU6107 lncRNA downstream 221520 28952553 ~ 28953065 (+) True G5005
TU6212 lncRNA downstream 623488 29354521 ~ 29361679 (+) True G5085
TU6230 lncRNA downstream 808180 29539213 ~ 29541316 (+) False AMCG00004011
TU6278 lncRNA downstream 953194 29684227 ~ 29685543 (+) True G5129
AMCG00003994 mRNA upstream 19015 28689888 ~ 28698767 (+) True AMCG00003994
AMCG00003993 mRNA upstream 33801 28640174 ~ 28683981 (+) True AMCG00003993
AMCG00003992 mRNA upstream 126189 28587831 ~ 28591593 (+) True AMCG00003992
AMCG00003991 mRNA upstream 132108 28568825 ~ 28585674 (+) True AMCG00003991
AMCG00003990 mRNA upstream 252136 28454419 ~ 28465646 (+) True AMCG00003990
AMCG00003999 mRNA downstream 876 28731909 ~ 28751998 (+) True AMCG00003999
AMCG00004003 mRNA downstream 351060 29082093 ~ 29108404 (+) True AMCG00004003
AMCG00004009 mRNA downstream 411729 29142762 ~ 29184704 (+) True AMCG00004009
AMCG00004007 mRNA downstream 528927 29259960 ~ 29265240 (+) True AMCG00004007
AMCG00004008 mRNA downstream 574171 29305204 ~ 29321613 (+) True AMCG00004008
TU5898 other upstream 614571 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 649996 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 2921991 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 4033862 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 5004648 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 1540177 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 2156962 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 4399087 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 6121830 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 7021500 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile