RNA id: AMCG00004003


Basic Information

Item Value
RNA id AMCG00004003
length 8041
RNA type mRNA
GC content 0.53
exon number 37
gene id AMCG00004003
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29082093 ~ 29108404 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTGCTTGGGCTTTGTGTGTCTCACAGCCATACATCTTTGCAGTCAGGGCAGCAAGGAAATACGGGCGAAGGACTGTAAGCGTCCAGGGGCCGGTCTCCGACACTGTGCTGACCCGGAATTATGTAGAATCCACACCAGTTTTACACGATTGCGTATTTTGTTAGCTTCCTTCTGTAGTGTCTACGTTTACCCGAGTGTCAAGGGCCCAATATACTATAGTCATTATACCTGTTATTATCCATCCTTGTCCTGCCCTGTCGTAGGCAGCCTTCTTGTTCTTTCCATAATTTATTGACTGGTTTATAACCTGGAAACGGTGATGATTGTGCATGAGCGCGGTGCCGGCCAGTAGCAGTATTGTACAGGAGGATGAATACAGAGGAGTTGGAACTGCTCAGTGACTCAAAGTATAGAAATTATGTAGCTGCTGTGGACAAAGCCCTTAAAAGCTTTGAGTACTCCAGCGAGTGGGCAGATTTGATATCTGCTCTGGGGAAGCTTAATAAGgtTTTGCAGAACAATGCCAAGTACCAGGTTGTGCCCAAAAAGCTAACGATTGGGAAAAGGCTGGCACAATGCCTTCACCCTGCTCTGCCCAGCGGAGTCCACCGCAAGGCTCTGGAGACCTACGAAATAATCTTCAAGATCATTGGGCCGAAACGGCTGGCTAAAGACCTCTTCTTGTACAGcTCTGGTCTGTTTCCTCTTCTTACCAATGCTGCCATGTCTGTAAAACCAGCTCTCCTGGGCCTATATGAGACCTACTATCTGCCTCTGGGAAAAACTCTCAAACCAGGattgcaggggttgttgactGGAGTGCTCCCAGGTTTAGAGGAAGGCTCAGAGTACTATGACAGAACAAACACCTTGCTGGAGAAAGTGGCCTCGGCAGTGGAGCAGTCTGCTTTCTACAGCGCCCTGTGGGGCAGCATCCTGACCAGCCCAGCGGTGCGCCTGCCAGGGATTACATACGTGCTCCTGCATCTCAATCGCAAGCTTTCCATGGAAGACCAGCTGTATATAATCGGCAGTGACATTGAGCTCATGGTTGAAGCTGTGAGCACTTCTGTGCAGGACTCCAGTGTGCTTGTGCAGAGGAGCACGTTGGACCTCATACTGTTCTGTTTCCCATTCCACATGAGTCAGGCCACTCGTCCAGATATGATTCGGATATTGTCCGCAGCACTGCACGTTGTATTGCGCAGGGACATGTCCTTGAACCGCAGACTCTATGCATGGCTTCTTGGCTTTGACAACAATGGCGTGAAAATAGGCCCAAGGAGCACGAGGCACAGCAATCCCGAGGAACACGCCACCTACTACTTTAATACATTCTCCAAGGACATGTTAGTTCAGGCAATGGTGGGAATCCTGCAAGGAAAAGCAATGGGTGGAGAAGAGGAGAGTGTTCTCATGCATGACCTTAAACCCTTCCGTATTTTAATAAGTCTTCTGGATAAACCTGAACTCGGGCCAGCCATTTTGGAAGATGTTCTGATTGAAGTGTTCAGGACTCTGCATTCACAGTGCAAAGCTGAACTCGACTTGCAAACACAGTCTCCCTTCAGTAAGGACCACACACAGTTAAGCAGCAAATTGAGGGAGAATAAGAAAACTGCAGAACTAATTAAGACTGCAAACCTCCTCTTCAACTCCTTTGAGCCGTACTATATGTGGGACTATATCGCCCGCTGGTTTGAAGAGTGCTGCCGGAGGACTCTGAATGCAAGGCTGCAGGCTGGGCCCGGTGGGAACTGTGAGCCTTCTGAACTCTCGCTCATTGAGTTCTGCCTGCTGGTTGACTTCCTGTTGGACATCGTATCATTGGAAACATACATCGAGATCCAGACGGAGCACCTGCCCCAGCTGCTGTTGCGGATGGTGTCGGCCCTGACTAGCCATCTCCAAGCCCTGGGTCTGGCAGAGCTGACCGACTGTCTGCGGCTCTGCTCCAAGATACTCAGCAAAGTGCAGCCGCCCTTGGTGTCTCCTGGAGCCGAGGGCAGCTTGCAGTTCTCCGTGGGGAAGGCTAGCTCAGTCGgagagaaggaagagaaaaagCTCTTCCCTGCCGCTCTGGAGAGCACCAGCGAGGTGTTCGAAGACAGCGAGAACCCCCCCAGCAGTCGCTCCTCCGAAAGCGGCTTCACCGAGTTCGTGCAGTATCAGGCCGAGAAGAACGAGGACCTCGACCACACTGCGGGGAACTGCCAGGGCCAGCACGGGGCTCTGCCGGTGGGGAGCACCTCCTCCGAGACCGAGACAGCCTCCACGGTGGGCTCTGAGGACACCGTCGTGCACCCGTCTCCCACCATGGGCCACGCCTCGTCGGCCCGCGGGGGCAAAGCCAAGCAGAAGACGGTGATGCAGTGCTGCCTGGAGTACTTCCAGCAGTTCCTCACCCGCCTCGTCACGCTGTACATCACACCCTGCACGGCTGCCTCCCCCGCCTTCACCAGTGAGTTCTGCAGCGTGCTGAAGGGCGACCAGGCTGTGAGGGGGGAGGTGGTGCGGGCCGGAGAGCCGGCACCCAAGAGCAGGGCCAGCTCCCGCTCGGCCCAGAGGGAGTGCCTGGGGGCCTTCACCGCCGCCTGCCAGCTTTTCCTGGAGTGTTCGAGCTTCCCTGTCTACATCGCCGAGGGCAATCTGAAGTCCTCGCCTCAGGCCGAGACACAGCAAGACTATGAGCAGGTCAAGCCTCCCGTGTGGCTCCAGACTCTCATGGATGCCTGCTGCTTCGCCAGTGAGTTCAGTATCCAGGCGGTTGCCATCTCTCTGGTGATGGACTTGGTGGGGCTCACGCAGTCGGTCGCAATGGTAGCTGGGGAGAACGTGGGCAGCCTCGACACAGCCCAGCCCATGAGCCCGAGCCAGGGGAGGGTGGCGGTAGTGATCAGGCCCCCGCTCACCCAGGGCATCCTGCGATTCATCGCTGAAAAGACTGAGTTTTTCAAGCACATTGCACTGACTTTGTGGAACCAGCTGGGCGAAGGAACCCCACAGCACCATCAGAGGAGTGTGGAGCTCTTCTATCAGCTGCACAATATGGTCCCTTCTTCCAGCATCTGTGAGGATGTCATTAGTCAGCAGCTGATGCACAGAGACAAGAAAATCCGGTTAGAGGCACATGTGAAGTTCTCTGTACTGTGGCACCTCACCCGGGACCTGAACATCGCCAAATCTTCCCCTTTCAATCGCACTTTCGACAGGTCCCTGTTCATCATGCTGGACAGTCTGAGCAGCTGGGATGCCTCCACCTGCTCTGTGGGCCAGGCTTGGCTTAACCAGGTGTTGCAGAGACATGACATCGCCAGGTTACTGGAAcccctgctgctgctcctgctccaTCCCAAAACGCACCGCGTGTCCGTGCAGCGAGTCCAGGCCGAACGCCACTGGAGCAGAGCCCGGGGCCCCCATGAGGAGGAGGACAGCGTGGCCGGCTACGCCAGGCCTTCCGACTTCATAGACAACTTCAGTCAGATGCCCATTGAAAACGGGAAGGCAGGGGCTGTGAGGGAGAGCCACGGAAGACTCCTCACTCTGGAGGAGATTGAGCACTTCAGCCTGACTGTGAATCCCCTTAGTGACAGCCTGTCTCTGCTCAGCACCAGCAGTGAAAACCTCCAGCTGGCAGTGGCAGACTTTGACCTGCCTGACCAGCAGATGGAGATCCTCCAGAGCTCTGAGTCAGGAGGTTCCCATTCCTCCACAGTGGACAATACCAGCTTTGAGGAGCCAGACGGCATCAACCCTACAGGGACACCTGATAACTCGCAAGTCTCCGTACTGGAGGAGTCAATAGACGTTGTTGTTCCACAGGTGGTGTTTGAGCTGGTCGACAGAGTAACCAAGATTGTTGAGGAAGGTTCAAAGTGTCAAGTGGTATGGAGTCATGGAGACTCTGACAGCTCCAGCTCAGAAAGTTCTTCAGCCCCACCAGGGTTGGATGCTTATTATGACCTGACGCAAAGTAAAAACGCTGCCTTCAAAGAAAGAGTTCCTGACTCTGAAGCTAATGGAACTCCTGAGTTTCTTTCTGTGACCTCAGACACTGGAGACGAGGAACCTCCTGACATGATCACCAGACACAGCTCTTCACCTTCCATCGTCACCATCCCAGATGCCACCCCTGAACCCGGCCTACAAGTTGAAGACCCACAATCGCGTAAGAGAAGCCAGAGCAGTATCCAGCTCAGCCTTAAGGGAAAGATCATGGAGAAGCTAGTGGACAAATCGCCAGGTGCCAAGCCCAAGGTCAAGAGCAGcaagaaaaaagaagagaagaagaaagctCAAGCAGAAAAGGCCAAGCAGCCCAACATCTTCTTTGGAGATAGCTTAGACCTAGAGAACTGGTACAGCTGTGGAGAGGGGGAGGTTTCAGAGATTGAGAGTGATGTTGGCTCCCCAGGAGTGCGGCGATCTGCCACACCCCCAAGATTCAACATTCACCCCCTCTATCAGCATGTCCTGCTTTACCTTCAGCTGTACGACTCCTCCCGTGCTCTTCATGCTCTCTCGGCCATCACTGCCATGCTGAAGGCAAGTCCCACCGGCTTCGTCAGTGCCATCTCCACGACCAGCATCAACAACACCTACACTCCTCAGCTGTCCCTCCTGCAGAACCTGCTGGCCCGCCACCGCATCTCCGTTATGGGGAAAGACTTCTACAGCCACATACCCATAGACTCTCACAACCACTCCTTCCGCAGCTCTATGTTCATCGAGATCATTATCTCACTGTGCCTGTACTTCCTGCGCAGCTACTACTCCACACACGTGCCCGCCTTGCAGCAGGACCTCTCGGGCAACCGCAACATGCAGATGATGAGCATCGAGGTCCTGATGCTGCTTTTCACTGAGCTCACCAAAGTCACAGAGGGATCGGCCAAGGGCTTTGCCAGCTTCATCTCAGACATGCTGTCAAAGTGCAAGGTTCAGAAGGTGATCCTTCACTGCCTCCTGTCCTCCATCTTCAGCGCCCAGAAATGGCACAGCGAGAGGGTGGCAGGCAGAAACATAGCAGCCGTCGAAGAGGGCCTGTCCGAAGACAGCATCATCAACTTCTCAGAGGACGAGATTGACAACTGCAGTACGGTCCAGTCGCAGCTGCTGCGTCTCCTGCAGAGCCTCATCATCCTGGAGCACAGGGTCATGGTCCATCCAGAGGAGGCTGAAGCTGGCTACGAGTTCATCAGCACAGAGGTGGAGCACATCAGCCCCCAGCAGCCCATGACTTCCCTTCAGTATTTACACTCCCAGCCCATTACCTCGCAAGGCATGTTCCTCTGTGCTGTAATCAGGGCGCTGCATCAGCATTACACCTGCAAGATGCACCCACAGTGGATCACCTTGATCACTGCTACCTTGCCCTATATGGGGAAACTGTTAAGGAGGGTCGTCGCATCAGTCACCATGCAGCTGTGTCGTAACCTAGACAACTTAATCCAGCAGTACAGATACGAGACGGGTTTATCACAAAACAGACCTCTATGGGTGGCTTTATGTATTCCACCAGACATGATTCTGACCGTTTTGGAGGGAATGACCACTATTATTCATTATTGCCTTCTAGACCCATCTTCTCAGTACCATCAATAGCCCTGGCGTCATCAATCTCTCTTGGTGTGGCAGCTATTGGTAAACGTGGACCAGAAGCACCTGTCAGAAGCTCGCACTGGGATCCTGTCCATCCTGCACACCATCATGTCATCCGTGACTCTCCTCTGGAGCGTCCTGTACCTGGCTGACAGCACCGACCGGCCAGCCGTGGCCTCGGCCTCCACCACTACTACCATCAACCTGGGCTCCACCAAGAACCTCAGACAGCAGATTCTGGAGCTGCTGGGCCCCATTTCCATGAACCACGGGGCTCACTTCATGGCAGCTATTGCGTATGTGTGGAACGAAAGGAAGCATGGCAAGAACCCCTCGCGCAATAAAGTCATCCCCACAGCCAGTGAAGAACAGCTCCTTCTAGTGGAGCTAGTGCGCTCCATCAGTGCAATGAGAACAGAGACGGTGATGCAGACTGTGAAAGAGGTTTTAAAGCAGCCACCAGCTATAGCCAAGGATAAGAAACACTTGTCCCTGGAAGTCTGCATGTTGCAGTTTTTCTATGCGTATGTCCAAAGGATACCTGTGTCAAACCTGGTGGACAGCTGGCCATCCTTGCTCTCTTTACTCAAAGAATCTGTGCAGCTTGGGCTTCCCTCCCCGGGACAGTTTCTTATACTCGGaatccTGAATGAGTTTATCTTGAAGAACCCCAATTTAGAAAATAAGAAGGACCAACGTGAACTGCAGGATGTGACACACAAAATAGTTGAGGCTATTGGAAATATTGCTGGCTCTTCCTTGGAGCAAACCACTTGGCTGAGGAGGAACCTGGAAGTAAAGGCCTCCCCTCAGATTGTAGTAGATGGAGCTAGCCTGGAAACGGACGTGGAAGATCTGATGCTCACAGTGATGGAGGCCTCCAGCTTCACTCCATCTCTGTACAGTGTCCACGCGTTGACTTTGCTTTCTGAGGTTTTGGCTCACCTCCTGGACATGGTGTTTTACAGTGATGAGAAGGAGAGGGTTATTCCACTCCTGGTCAACATCATGCACTACGTTGTGCCCTACCTCCGCAACCACAGTGCCCATAATGCCCCCAGCTATCGTGCATGTGTGCAGTTGCTGAGCAGCCTGAGTGGCTATCAGTACACAAGGAGGGCTTGGAAGAAGGAGGCCTTTGATCTCTTCATGGACCATACATTCTTCCAGATGGACTGCTCTTGTGTCAGCCACTGGAGAGCCATAATGGACCACTTGATGACGCATGACAAAACTACATTCCGAGACCTGATGACACGGGTGGCCGTGGCTCAGAGCAGCTCCCTCAACCTGTTCACGAATCGCGATGCTGAGCTGGAGCAGAGAGCCATGCTCCTCAAGAGACTGGCTTTCACCATCTTCAGCAGCGAGGTGGACCAGTACCAGAAGTACCTCCCAGACATCCAGGAGCGCTTAGTGGAGAGCCTCCGCCTGCCCCAGGTCCCGACGCTCCACGCACAGGTGTTCCTGTTTTTCCGGGTCCTGCTCCTGCGAATGTCTCCACAGCACCTGACCTCCCTGTGGCCCACAATGATCACAGAGCTGGTCCAGGTGTTTTTACTCATGGAACAGGAACTCACAGCTGATGAAGACATTTCAAGGATTGCTGGCCCCTCAGTTGCAGGCTTGGAAACCACTTACACAGGGGGGAATGGATTTTCCACTTCCTACAACAGCCAGCGCTGGCTCAACCTCTACCTCTCTGCCTGCAAGTTCCTTGATTTGGCCCTGGCTTTGCCTTCTGAAAGCCTGCCTCAATTCCAGATGTATCGGTGGGCTTTCATTCCCGAGGCATCCGATGACTCTGGGTTGGAGGTCCGCAGACAGGGAACTCACCAAAGGGAATTCAAGCCCTATGTGGTTCGCCTAGCAAAACTGTTAAGGAAGAGAGCAAAGaaaaacccCGAGGAGGACTGCACGGCTAGGGTCATAGCCTGGGAGCCGGGCCACCTGCTGCTGACTCTGTACACAATCCGCAGCATGGAGCAGCTCCTGCCCTTCTTCAACGTGCTCAGCCAGGTGTTCAACAGCAAGGTGACGAGCCGCTCTGCGGGACACTCAGGGAGCCCTGTCCTCAACACCAACGCTTTCCCCAGCAAGGACATCAAGCTGGAGAGCCAGAAAGTGTTCTGGAGCAAAGCCAGGCAGAACATCGAGGAGATGGTGGAGAAGGACTTCCTCGAAGGACTGATTAAAACATAAGTGAACTGAATGATGGCACTGATCGATTACTgaagaaacaaatgaatgaacaaaataaaaaaaaggaaatttgtaaatgtcattttgtatttataatgaacacattttacatttaaaagctgtatgtatttaatttaaataattttatttgtatatatggaACAACTGTGAAGGCTGACTAAATTATAACTGTCTGGCTTTGGTTTATTCCTTGGCCTGTGTATACATGACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6107 lncRNA upstream 129028 28952553 ~ 28953065 (+) True G5005
TU6083 lncRNA upstream 189062 28892684 ~ 28893031 (+) True G4981
TU6060 lncRNA upstream 417383 28664502 ~ 28664710 (+) False AMCG00003993
TU6014 lncRNA upstream 505159 28568184 ~ 28576934 (+) False AMCG00003991
TU6007 lncRNA upstream 613149 28466917 ~ 28468944 (+) True G4917
TU6212 lncRNA downstream 246117 29354521 ~ 29361679 (+) True G5085
TU6230 lncRNA downstream 430809 29539213 ~ 29541316 (+) False AMCG00004011
TU6278 lncRNA downstream 575823 29684227 ~ 29685543 (+) True G5129
TU6294 lncRNA downstream 589263 29697667 ~ 29699224 (+) True G5141
TU6346 lncRNA downstream 1000437 30108841 ~ 30109040 (+) True G5185
AMCG00003999 mRNA upstream 330095 28731909 ~ 28751998 (+) True AMCG00003999
AMCG00003998 mRNA upstream 351060 28717782 ~ 28731033 (+) True AMCG00003998
AMCG00003994 mRNA upstream 383326 28689888 ~ 28698767 (+) True AMCG00003994
AMCG00003993 mRNA upstream 398112 28640174 ~ 28683981 (+) True AMCG00003993
AMCG00003992 mRNA upstream 490500 28587831 ~ 28591593 (+) True AMCG00003992
AMCG00004009 mRNA downstream 34358 29142762 ~ 29184704 (+) True AMCG00004009
AMCG00004007 mRNA downstream 151556 29259960 ~ 29265240 (+) True AMCG00004007
AMCG00004008 mRNA downstream 196800 29305204 ~ 29321613 (+) True AMCG00004008
AMCG00004010 mRNA downstream 272179 29380583 ~ 29391128 (+) True AMCG00004010
AMCG00004011 mRNA downstream 419010 29527414 ~ 29541358 (+) True AMCG00004011
TU5898 other upstream 978882 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 1014307 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 3286302 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 4398173 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 5368959 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 1162806 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 1779591 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 4021716 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 5744459 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 6644129 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021233 False 8130 mRNA 0.49 38 NC_007127.7 33062570 ~ 33097398 (-)
grasscarp (Ctenopharyngodon idella) CI01000027_10015409_10036875.mRNA True 7912 mRNA 0.51 38 CI01000027 10015141 ~ 10036875 (-)