RNA id: AMCG00004020


Basic Information

Item Value
RNA id AMCG00004020
length 969
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00004020
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29698040 ~ 29699320 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGGCGAGGCGAGGCGGAGCTCAGGTGCTCGCCGCTGCGTCCACTTGGCCAAGAGCCTGGGAGACGCCTGTGGCAAAAAAGTAACTGTCAAATGCACGGCTCCTTTAACAAGAGCGATCAGTCCGGCTCCGAGAGTCATGGCGACCACAGCGTCTAATCATTACAATATCCTCACCTCCAGCTCCTCCATCGTGCACTCGGAGCCCGGGAGCATGCAGCAAGGGACGGCGTACCGAGATGCACAGACACTGTTGCAGAGCGACTATACCCTGCAGAGCAATGGTCATCCTCTCAGCCACGCACACCAGTGGATAACGGCACTGTCACACGGAGACGGGGCTCCCTGGTCCACCAGCCCCTTGAGCCAGCAGGACATAAAGCCCGCTGTGCAGAGCGGCAGGGACGAGCTGCACAATTCAAGCAGTTTGCAACATCAGCCGCGACCGCCTCATCTGGTGCACCAGCCGCATGGGAACCATCACGACGCAAGGGCATGGAGGACTACCACAGCAGCGCACATCCCGAGCATGGCATCAACTAACGGACAGAGTCTTATATACTCACAGCCTGGGTTCGAGGCCCTGCAGCTCAGTTTTAAGAACATGTGCAAGCTCAAGCCTTTGTTGAACAAGTGGTTGGAGGAGGCAGATTCAACTTCTGGGAGTCCCACCAGCCTGGACAAGATAGCAGCGCaggggaggaagagaaaaaagcGGACCTCCATCGAGGTAAGCGTCAAGGGGGCTTTGGAGAGCCATTTCTTAAAGTGCCCCAAACCTTCAGCCCCAGAAATCACTTCGCTAGCGGACAGTCTTCAACTGGAGAAGGAGGTGGTCAGGGTTTGGTTTTGTAACagaagacagaaagagaaaaggatgACCCCTCCCGGAGGAGCCCTCCCAGGACCGGAGGATGTGTATGGGGACACTCCGCCACACCATGGGGTTCAGACTCCTGTACAATGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6209 lncRNA downstream 368925 29324741 ~ 29329115 (-) True AMCG00004006
TU6201 lncRNA downstream 428119 29183092 ~ 29269921 (-) True G5076
TU6134 lncRNA downstream 687231 29007691 ~ 29010809 (-) True G5032
TU6114 lncRNA downstream 722773 28974978 ~ 28975267 (-) True G5012
TU6084 lncRNA downstream 805008 28892682 ~ 28893032 (-) True G4982
TU6342 lncRNA upstream 403125 30102445 ~ 30102654 (-) True G5181
TU6357 lncRNA upstream 413063 30112383 ~ 30115011 (-) True G5194
TU6405 lncRNA upstream 485298 30184618 ~ 30209655 (-) False AMCG00004038
TU6435 lncRNA upstream 574486 30273806 ~ 30276224 (-) True AMCG00004041
TU6456 lncRNA upstream 838616 30537936 ~ 30538437 (-) True G5269
AMCG00004019 mRNA downstream 151939 29538992 ~ 29546101 (-) True AMCG00004019
AMCG00004021 mRNA downstream 171530 29513010 ~ 29526510 (-) True AMCG00004021
AMCG00004018 mRNA downstream 191042 29500845 ~ 29506998 (-) True AMCG00004018
AMCG00004006 mRNA downstream 369156 29326714 ~ 29328884 (-) False AMCG00004006
AMCG00004005 mRNA downstream 500865 29190680 ~ 29197175 (-) True AMCG00004005
AMCG00004022 mRNA upstream 11657 29710977 ~ 29880791 (-) True AMCG00004022
AMCG00004034 mRNA upstream 333245 30032565 ~ 30045392 (-) True AMCG00004034
AMCG00004035 mRNA upstream 359359 30058679 ~ 30077713 (-) True AMCG00004035
AMCG00004033 mRNA upstream 417119 30116439 ~ 30124017 (-) True AMCG00004033
AMCG00004032 mRNA upstream 450992 30150312 ~ 30156711 (-) True AMCG00004032
TU5805 other downstream 2828462 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 3796428 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 5402264 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 5402264 24288131 ~ 24295776 (-) False AMCG00003909
TU5015 other downstream 6164158 23529519 ~ 23533882 (-) False AMCG00003893
TU6736 other upstream 2610160 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 2708482 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 2894307 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 4432778 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 5192581 34891901 ~ 34892613 (-) True G5871

Expression Profile