RNA id: AMCG00004024


Basic Information

Item Value
RNA id AMCG00004024
length 1326
RNA type mRNA
GC content 0.37
exon number 7
gene id AMCG00004024
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30111086 ~ 30114969 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCTGCGTTTTTCTTTGTAATCAATGGGAAATTGGGAGAAAAAATGACAGATTACGGAGAGGAGCAGCGGAACGAGTTGGAGGCATTGGAGTCCATATATCCGGATTCGTTTACAGTGCTTTCTGAAAATCCTGCCAGTTTTACCATTACTATGACATCTGATCCAGGAGAAGATGATGAGACTGTTCAGACAACTTTAAAGTTTACATATGTAGAGAAGTATCCGGACGAACCTCCACTTTATGAAATATTTTCACAGGAGAACCTTGAAGACAGTGATGTCAAATCTATTCTTGCATTATTAGAACAACAGGCAGAAGAAAATCAGGGAATGGTGATGATTTTCACATTAGTAACTGCAGTGCaggagaaattaaatgaaattgtcGATCAGATAAAGAACcgaagggaggaggagaagaggaggaaagagaaagaggctGAGGAAGCAGAAAAGGTACAATTCCATGGCACACCTGTCACAATTGAAAGTTTTCTCTCATGGAAAGCTAACTTTGAAATTGAGATGTCCGAACtaagaagaaaaagacagaaagaggagGACATGTcagggaaaaacaaacttaCTGGGAAAAAGCTATTTGAAACGGACCATAATCTTGACACATCTGACATCAAATTCCTTGAAGAAGCTGGAAATAATGTAGAAGTAGATGAGTCTTTATTCCAGGACATGGATGATCTGGAGCTGGATGAGGATGACCCAGATTTTGATCCAGTTGGCTTAGGTAGCGATGAGGACTAGTCAATGAAACCTGCCCCgtcaaaatgaatgaaaaactaCACGGACAGCTACAGTATCTGTGGCTGAGCATAACCCAGCATGATGACacccattttcttttaaatctaaaaagtttataatttcattggctgtaattaataaatgtgttaacatttaaaaagagccTGAGGTAATGATCATATTCATTATTGATCTTTGGAGGAGGGGGAGTTTTAAATTGGTTCACTCTAGCCTTACCTAAACTTATCTTTAATCCCTGcaacattttcttctgaaatgttaaaaagagTGGCGGGGGTGGCAGTTATTAGGCCAACATTTTTTTTGAGGGACATGACAGACTTTGAGTGGTTCATAAAGTGTCACAGAACCCTGagacatatatacagtatatttaattgtacagGAAGTTCACCTTTATGCACTACCCATATTAATCAGGAGATGGCAGCATTTAGTTTTACAGATCAATTTGTGGAatatttttcaaagttttttttctttcctttttaaatcgAATTGttgcctttaaaacacattaaaacaattgaaattcATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6346 lncRNA upstream 2046 30108841 ~ 30109040 (+) True G5185
TU6294 lncRNA upstream 411862 29697667 ~ 29699224 (+) True G5141
TU6278 lncRNA upstream 425543 29684227 ~ 29685543 (+) True G5129
TU6230 lncRNA upstream 569770 29539213 ~ 29541316 (+) False AMCG00004011
TU6212 lncRNA upstream 749407 29354521 ~ 29361679 (+) True G5085
TU6352 lncRNA downstream 7126 30122095 ~ 30123181 (+) True G5191
TU6362 lncRNA downstream 30886 30145855 ~ 30146557 (+) True G5198
TU6434 lncRNA downstream 160139 30275108 ~ 30276282 (+) True G5248
TU6440 lncRNA downstream 181898 30296867 ~ 30307175 (+) True AMCG00004039
TU6458 lncRNA downstream 430318 30545287 ~ 30545525 (+) True G5271
AMCG00004027 mRNA upstream 13366 30094302 ~ 30097720 (+) True AMCG00004027
AMCG00004023 mRNA upstream 112402 29983613 ~ 29998684 (+) True AMCG00004023
AMCG00004013 mRNA upstream 429492 29663803 ~ 29681594 (+) True AMCG00004013
AMCG00004012 mRNA upstream 484568 29613189 ~ 29626518 (+) True AMCG00004012
AMCG00004015 mRNA upstream 499556 29600561 ~ 29611530 (+) True AMCG00004015
AMCG00004026 mRNA downstream 16267 30131236 ~ 30137944 (+) True AMCG00004026
AMCG00004025 mRNA downstream 42393 30157362 ~ 30167872 (+) True AMCG00004025
AMCG00004029 mRNA downstream 86219 30201188 ~ 30202790 (+) True AMCG00004029
AMCG00004030 mRNA downstream 111664 30226633 ~ 30229627 (+) True AMCG00004030
AMCG00004037 mRNA downstream 139401 30254370 ~ 30255135 (+) True AMCG00004037
TU5898 other upstream 2007875 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 2043300 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 4315295 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 5427166 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 6397952 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 156241 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 773026 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 3015151 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 4737894 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 5637564 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile