RNA id: AMCG00004027


Basic Information

Item Value
RNA id AMCG00004027
length 2851
RNA type mRNA
GC content 0.39
exon number 2
gene id AMCG00004027
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30094302 ~ 30097720 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAAACTCCCAAGACAACTACTTAGCCTCTGCAAAAAGCTTCAATAAGCAAGTGCGTGTTGAAACACACATCCAGGAAGTGGACGAGCACAGAGACGCAAAACAAGGTCGTGAGACACAAGAGGACACTTCTTATCTGCCATCTGTGTCTGAATGCGACATGGATAAATTTGGCACTGTTTTCAGCGTTTTCCAGAAGCAGCAGACCAGCTTGGGGTTTGGGTTAGTGGCTTTGCTGACTGCCGGCGGGGAGCAGATCTTCTCGGCGGTGGTCTTCAAGTGTCCTTGCAGTTCGTGGAGCTTCGCCTACGGCAGTGTGTTTCTCTTGGTCCCCGCTCTTGTGTTGCTGATGTTGGGCTACATGCTCAGCGACAGGACGTGGAAGTTATTTACCGGCGTCTGCATTGACGACAACAGTGTATGTCGGAAAGGAAAGTTGTGCGcctgttttaaagtgtttgcgCTAATAAGTGTAAAGGCGATGGTAGCGCCGATCAGCTGGATTGCAGTTGCCCTTTTGAACGGCAGCTACTTTGAGTGTGCAATGACCGGGTTGAATAGCACCTTGTacactgctgctgtttgtgaAGGGAAACCCAGGGCTTGTGAAGAAGAGCTTCAGAGGGTTCCTTGCGGAAAATCCTCCATGTCTTCATCTGACAGTCAAGATGTCTTACTGATTATAAAAGCACAGTCGCAGACGCTGGGTTGGGTGGTCATTGCCTCCATCATGGTCTCCGGCCTTGTCCTCACCTGCATGGCGCGATGTCGTTCCCCTGTCAGCTACCTACAGCTCCGCTTCTGGAGGGCTTACACCCAGAGTGAGAATGACCTCTTCGAGAAGATGTCCTCAGAACATGCGAGAAAGCTGGCCGAGCGAAATCTGACGAGTTTTTTTCAGTTGAGGCAACCTGCTCCAATGGAAACACCTGATGCCAAAGCCTGGAAAAAGATCTCATCCCTTTACAAATTCGGCAACACGGATCATTATTACAGTAATCTACACAAGTATGTAGAAACACACTCAGATCATGCTAGATTATCAGTAAAGTCTGAAGAAGGTGATTTTGTTAATCCATCAGTTCTGGCCTTTGTAGATGATggcaaatctgttttttaatatatttgtaatgtaatgtacctGAATATAgcaaatataatgaaatatcacattttatatagataattctaactgaaactgaaactcacagttggatatatttatattttgatttatattggtATGAATTGAAACATGTATGCATTCTGAGCATATGTAATTTCTGTTGCTGCTTTTTGCTAtgtcttttataaaaaaaaatctactgttAAAGTTGGATAATTTATGATAAGAGTCCTCAGCAGAATATAAAGAGTTTACATGTAGTGTTGAGCATTTgctaataaataacaaaacgtttttaaatataatatcctggtttgtatatatttatatatatatatatatataatcacatgtacatgtgtataatatataaataatgtaaggaATAAAACAGTCTGAAGCTGAGGAAATTCCACCCTAGTAAAATTCCACAGTTTAAAGTCGTCTCCCCAAATGTTCCTGGGTGTCGTCCTGATTCACAGGGGTGAACACAGGGGCTGAGGGAGGGGGTCTCTGGTGTCGATAACGTAACAAAAGGTTAATAATGAGACAGTCTGTCTACCAGtcttgtatcaatagcatatcaaaagctattgacAAAGCCTGTCTAACATCACCTTGTATgctaataggcagctgccattggctACTTTGGTAGGTGGGTTGGTCACTCGGGTCAAAGGATTTAATGGATACTAAAAATCAAATGAGCCACagttgcattttgaaatgtttttttttaatcttatgtatatatgtgtttgttgctGTGAGTATGTTAAATACGTTAAATCAAACAAGGACCTGctgttttgtggtttgtgtATTTGCTTCTGTGAAAGAGGAATCAAAACCATCTATACATTGatgaaatgctgaaatataATGATACAGCACAATCTTGAAACCACATATATTGCTTCCTCCTCTATTCCAATAAATATGTTGGCATCAGTAAGCTTTTTTGTGCTGCCTTTCTGAGTTtctacttgtttattttttgttgcgTTTCTTTTAGCTATGGGCGCAGTGTTTCATTAGGTCACTAAATTGCTGGTTGGATGATTATTTCTTTCTGTTGTCCTTGTCATTTTTGTTCTATGCCAGAGTTCAAAATATAATGAACTGTGTATTATCAATTATCacctttctttttattgttcctgtttttttggaCTATATACCGTTCCCTGAATGGGATGCTGAAAGCTGCAGTGccttgttatgttttgtttttaatacattcctTGCTTCACTGACCGTCACGTCTAACCTTAGTTTTCCCCTACAGACATCACCCAAATCAGTGTAAACAACTTGAAAGAAGCAAAAGTAAATAGGaccaaaaaaatacttaatagataatacatttaaaaaaacaaattctgaaCTTGCAACACCAGGTTAATCCGAATTGTATATTTAACTTACTGGCTTTCCAGTTCAATTCCTGATTATGGTCtttttaatcataaattaacttatttgaaaataaatagtaaacTACTCAAACTGTCTTGAGGGATTCATTTAATTGGGGATTTATCTTAATTTCCTCCTTTTCCACTACTTAATACaacagcttttttcttttattttctttcctgtctACACACAAACTTAGATATAACAGAAACCAAACAGGAAACAGCAAAGAAGGAAGGAAATCGTATTAGCAGAtgacatttttggaaaatgtatgttttgtttttaactacattcaat

Function

GO: NA

KEGG:

id description
ko00680 Methane metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6294 lncRNA upstream 395078 29697667 ~ 29699224 (+) True G5141
TU6278 lncRNA upstream 408759 29684227 ~ 29685543 (+) True G5129
TU6230 lncRNA upstream 552986 29539213 ~ 29541316 (+) False AMCG00004011
TU6212 lncRNA upstream 732623 29354521 ~ 29361679 (+) True G5085
TU6107 lncRNA upstream 1141237 28952553 ~ 28953065 (+) True G5005
TU6346 lncRNA downstream 11121 30108841 ~ 30109040 (+) True G5185
TU6352 lncRNA downstream 24375 30122095 ~ 30123181 (+) True G5191
TU6362 lncRNA downstream 48135 30145855 ~ 30146557 (+) True G5198
TU6434 lncRNA downstream 177388 30275108 ~ 30276282 (+) True G5248
TU6440 lncRNA downstream 199147 30296867 ~ 30307175 (+) True AMCG00004039
AMCG00004023 mRNA upstream 95618 29983613 ~ 29998684 (+) True AMCG00004023
AMCG00004013 mRNA upstream 412708 29663803 ~ 29681594 (+) True AMCG00004013
AMCG00004012 mRNA upstream 467784 29613189 ~ 29626518 (+) True AMCG00004012
AMCG00004015 mRNA upstream 482772 29600561 ~ 29611530 (+) True AMCG00004015
AMCG00004017 mRNA upstream 496075 29591603 ~ 29598227 (+) True AMCG00004017
AMCG00004024 mRNA downstream 13366 30111086 ~ 30114969 (+) True AMCG00004024
AMCG00004026 mRNA downstream 33516 30131236 ~ 30137944 (+) True AMCG00004026
AMCG00004025 mRNA downstream 59642 30157362 ~ 30167872 (+) True AMCG00004025
AMCG00004029 mRNA downstream 103468 30201188 ~ 30202790 (+) True AMCG00004029
AMCG00004030 mRNA downstream 128913 30226633 ~ 30229627 (+) True AMCG00004030
TU5898 other upstream 1991091 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 2026516 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 4298511 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 5410382 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 6381168 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 173490 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 790275 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 3032400 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 4755143 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 5654813 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile