RNA id: AMCG00004028


Basic Information

Item Value
RNA id AMCG00004028
length 3907
RNA type mRNA
GC content 0.55
exon number 24
gene id AMCG00004028
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30258472 ~ 30270198 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acagagagcgggCGGTCCCGGGGAGGCAGTGGAGCTATACTGCGACATACATGGCACCGAGGCACGGCCATCTCTGTTAGGGAGAAGTCGGGAGAGATGTGCAGGGGAGCGGCCGGGACTGCGCTGTCAACAGTGTGAAAACTGGAGAGTCGATACCGGTCCAGCTCGGTAACAAGAGAGAGGCTTAACCCGCCCCCGGTCTGTCAGAACCACGGCACCCTGAACCGAATCGGGGAAAGACTAGGGAAGCCCGTAGGTCGTGCACTGCCTGCAGGCGTCTGTTCCGAACCGGGCCGAGTCGGGCCGGCGTGCGGGGGGGCAGCGCGGCGGGAATGAGACGGCTGCACTAGTCAAGAGTACATTtcacccccacacacatacacacacacagTCACAGTCATGAAGAAGAGGGCTGATTACGCAGAGCCACacaagaagaagaggaagcGTTGTGAGGAGCTGAGCTCCACCTCGGATGATGATCCTCCGGGGACAAGGCCAGACAGCCAAGACTCCAGTCAGAGTGACTCCCTTAGTGATCCAGAGGACATCAGACCTGGTTTTGCTGCATCTTCAatgtcccagcatgcactgcagccAGCGCCAGTGCTGGAGGGCTCCTCCAGCAACTTCTCCATCTATAACAGTGTCTCTCAAAAACTCATGGCGAAGATGGGTTTCCGTGCGGGGGACGGCCTGGGGAAGTTTGGCCAGGGCCGGCGGGAGATAGTGGAGGCATCTACACAGCGCGGCCGTCGGGGTCTGGGCCTCACATTGCAGGGTTTTCAGGGAGAGCTCAATGTCGACTGGAGGGATGAGCCTGAGCCCAGCGCAGTGGAGGATGTGCAGTGGTTTCCAGAATGCTCCGCTGAGTTCCCCGACTCTGAGGAGCTGACCGAATGGATGATCGTGGGGGAGAGAAAGCTGCGGATAGAAGACGAGACAGAGTTTTGCAGTGAAGAACTTTTACACAGTGTCTTGAAATGCAAGAGTGTGTTTGATGACCTGGAGGGGGAGGAGATGCGTCGTGCTCGGACTCGGTCCAACCCCTACGAGACCATCAGGGGAGCCTTCTTCCTAAACCGagCCGCAATGAAGATGGCCAACATCGACCACGTCTTCGACAACATGTTCACCAACCCTCGTGACGCCGAGGGGAAGCCTCTGACCCGGGACCGAGACGGGGAGCTGCTTTATTTTGGGGATGTGTGTGCAGGGCCGGGGGGGTTTTCTGAGTATGTGCTGTGGCGGCGGCGCTGGCATGCCAAGGGCTTCGGCATGACGCTGCGCGGCGCCAATGACTTCCGTCTCGAAGACTTCTTTGCTGCGCCCAGCGAGCTGTTCGAGCCTTACTACGgGGAGGGAGGAGTGGATGGAGACGGTGACATCACTCGTCCAGAGAATATCAGTGCGTTCCGGAACTTTGTGATGGAGAGTACAGAGCGCCGTGGGCTGCACTTCCTCATGGCCGATGGGGGCTTCTCGGTGGAGGGGCAGGAGAATATCCAGGAGATTCTGAGCAAACAGCTGCTGCTCTGCCAGTTCCTGACTGGACTATCAACGCTGAGGACAGggggTCACTTCATGTGTAAAACGTTTGACCTGTTCACCCCGTTCAGTGTGGGGCTGGTGTACCTGCTGTACCTCTGCTTCGACAGAGTCTCCCTCTTCAAGCCCGTCACCAGCCGCCCCGCCAACTCTGAGAGgtaCTTGGTGTGTCGCGGCCTGAAGCCCGGATCTGACCCAGTGAGGGAGTACCTGTTTTCTGTGAACCTTAAACTGAACCAGCTGAGAAACTCCAACTCTGACGTCAACGAGGTTGTCCCTCTGGAGATTATGAAAGGCGACAGCGACTTCTACCAGCACATGGTCCGCTCCAATGAGAGTCACTGTGCTGTGCAGATTAAAGCCCTGGCCAAGATCCATGCCTTTGTTCGAGAAACgacGCTTTCGGAGGCGAGGCAGGCGGACATTCGTAAGGAGTGTCTGAAGCTGTGGGGGATCCCTGACCAGGCCAGAGtgaccccctcctcctctgacCCCAAGACCAAGTTCTATGAGCTCATTAAGGGCTCTGACATTGAGACTTTCAACTACAAGCCCACCCCACTGAGCACAAGCACGCTAGACAAGGTGCACCATGTCCTGGACTACCGCTGTATCGTGGGAGGGGGAGAGCAGCTGTTCCTGCTCGGCCTGGGGAAGTCCCAGATCTACACGTGGGACGGGAAGCCACCGCTGCGCTGGAAGAAGCTGGAGAATTTCAAGACAGAGCTGCCGAGAGAGACGCTGCTGAGTGTGGAGATTGTGCAGGAGCTGAAGGGGGAGGGCAAGGCGCAGCGCAGGATCAACGCAATCCATGTCCTGGACGCACTGGTACTAAACGGGACAGACGTCCGTGACCAGCACTTCAATCAGCGGATCCAGATGGCGGAGAAGCTTGTGAGAGCCGTGTCCAAGCCCAGCCGGCCAGACATGAACCCAATCCGAGTAAAGGAGGTGTACAGActggaggagatggagaaaatatttgtcagGAGACAGTAGCCCTGGACAATGGCATACAGCAAGAATTCCAAGAAAAAGTTCTTCTACAACAAGCTGACGAAAGAGTCAACCTACGCCCTCCCGGGCAACGCAGTAGCCCCTTTTCACGTCTGTCACTTTGAGCGTCTGTTCTGGGCATGGGAGGATGGGGTCAGAGTTCATGACTCCCAGAGTAGAGTTGACCCTGAGAAGCTGTCCAAGGAGGATGTGCTGTCATACATCCATCAGCACTACCAGCCTTGAGAAAATTCCCCCAAAACCCCAGACCtgagacaccccccccccccatccccagccCTGAGAGGGATATGGGCTGCCCCACCTCGAGACTAACAGCCCCACACCCTCTGATCTAATTCTCCAAACAGACCCTATACTCTATACTCCAGCTCCTTACCCTGAGACACAGCTGACCTCCCCAGTCTCTAATGCCTGAAGTGGCTGTGTCTGCTGCTCTGTGGGAGTCTTGCCTCCCCCACACTGCTTTCTTAGGAACTGGAACCCAACACTGGCTGTGGGACTGGGCCCAGCAGAGCAGCTTTACTGGAAGCTGTGGGATACCCTGGGACACTGGTGATCCCAGTATTGAGGCTTGGTCATACAGACGGCTCACAGTCTGAACTGCTTGGGCTTGGAGGAAATGGTCTTATCGCTACCCTGCTTCTTCATTAGAtatcatttatgtttttcttgcttGATTTCATATCCACTGTCTAGTTTTGAATTGTTCATAAATATGCAGAGGCGCAGTGTTGACAGCAGCGTTCACACGAGTCTCTAAGAGAGTGGTCAGTCCTGCTCTCAGTGCTGCACCTTGCCTGCCAGTGTTGGGGGACACTCTGCTGAACCGTATTTCTGTGGGGTAGCTAGAGGACCTGGCAGCTGTGGCTCAGTGTCCTGTCCTGAGTGTTTGATGGAGCTGTACTGTTCCTCCGGTTCTTTCTCCTCCCCTCCCACTCAGCGGCAGCCCAGCCTGCCGAACCCACAGCCTGTaaaccattttgttattttgtcttttattcaaatgctttttcatgGCGAGCCTCGTCTCCTGGTGTGTCACACAGCTCTGTTCCTGCAGGGCAGCGCAGGGATGCCGTGCTGCACTTCACAGCGGCAGGCTCCTCACGCGCTGCCAGCTCGCACTTCCCTCTGCCTGGCCTActctggttttgtttgtgttgcaggatGTGTTCATACTGATGTCAGCCAgttgaaggaaaaataaaaaatgttttttgtttcaaagaagctgacaaaatattaagaataaaataattttgtgttCTTAAACCCCGGACAAGTATCtcatttcttatattttctctAGCCAACAAGATACCGTTTCTGTTAGTTTTCC

Function

GO:

id name namespace
GO:0097309 cap1 mRNA methylation biological_process
GO:0006370 7-methylguanosine mRNA capping biological_process
GO:0005634 nucleus cellular_component
GO:0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14589 CMTR1, FTSJD2, MTR1; cap1 methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6362 lncRNA upstream 111915 30145855 ~ 30146557 (+) True G5198
TU6352 lncRNA upstream 135291 30122095 ~ 30123181 (+) True G5191
TU6346 lncRNA upstream 149432 30108841 ~ 30109040 (+) True G5185
TU6294 lncRNA upstream 559248 29697667 ~ 29699224 (+) True G5141
TU6278 lncRNA upstream 572929 29684227 ~ 29685543 (+) True G5129
TU6434 lncRNA downstream 4910 30275108 ~ 30276282 (+) True G5248
TU6440 lncRNA downstream 26669 30296867 ~ 30307175 (+) True AMCG00004039
TU6458 lncRNA downstream 275089 30545287 ~ 30545525 (+) True G5271
TU6459 lncRNA downstream 282779 30552977 ~ 30553214 (+) True G5272
TU6489 lncRNA downstream 470366 30740564 ~ 30740873 (+) True G5291
AMCG00004037 mRNA upstream 3337 30254370 ~ 30255135 (+) True AMCG00004037
AMCG00004030 mRNA upstream 28845 30226633 ~ 30229627 (+) True AMCG00004030
AMCG00004029 mRNA upstream 55682 30201188 ~ 30202790 (+) True AMCG00004029
AMCG00004025 mRNA upstream 90600 30157362 ~ 30167872 (+) True AMCG00004025
AMCG00004026 mRNA upstream 120528 30131236 ~ 30137944 (+) True AMCG00004026
AMCG00004039 mRNA downstream 33193 30303391 ~ 30307144 (+) False AMCG00004039
AMCG00004045 mRNA downstream 434942 30705140 ~ 30722327 (+) True AMCG00004045
AMCG00004050 mRNA downstream 511856 30782054 ~ 30802209 (+) True AMCG00004050
AMCG00004049 mRNA downstream 534893 30805091 ~ 30807233 (+) True AMCG00004049
AMCG00004051 mRNA downstream 572522 30842720 ~ 30849036 (+) True AMCG00004051
TU5898 other upstream 2155261 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 2190686 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 4462681 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 5574552 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 6545338 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 1012 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 617797 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 2859922 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 4582665 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 5482335 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile