RNA id: AMCG00004036


Basic Information

Item Value
RNA id AMCG00004036
length 1155
RNA type mRNA
GC content 0.40
exon number 5
gene id AMCG00004036
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30175559 ~ 30188592 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCTGCCAAGCTAGCACCGATGCTCCAGGGCTTATCGGAGTAACAGCTCCTGGGGATATTATCATCGGTGGACTGTTCCCAGTTCATGAGCAAACTGTTCTATTGAACATTGGAGGGTTCACCCGGATGCTGGCTATGAAACATGCTATTGAAGTTATTAATAACTCGTCTCTGCTCAATGGACTTATGTTGGGGTATGAAATCTATGACTCGTGCTCCGATGTCTCCACTGCAATCAGGGCCACCATGGCCTTCCTGAACTATCCTGGAAGCTGCGCACAGGAGCACTACAACACAAGTGAGCCCCCCGTCAGAGTGCAGGCTGTGGTGGGAGAAGCCTACTCTGAAATTTCAATAGCTGTTGCACATCTATTAAATTTGGAGCTGATTCCACAAAACACAGATACTAAGATAAATCAAGCTATAAACACCATCCGCAAAAACCAAAGAGTAAATGTCATAGTTTCCTTTGCCAAGCCAGCGCATATGATGAAAATATTTGACTCTTTCTGTGAAGAAACTCTAGGCAAAATCTGGATTGCTAGTGACAGCTGGTCCATGTCGAAAGAAGTTATACACAAATCAAAGCTAACCaatattggaaaaataattggatttacatttaaaacaggaaatatcACACAATTTCAGAATTATCTCAACAGTCTTAAAATCAGTGAGGACACATTtaaggaaaacatatttttagacCATGACCAAGCAGATGTCGTGTTTTTGAATGACACtacaaacataaacaacacaCAGGAATCAGGAGTCAATGTCTTGATAAACAACTTACATCGTGATGCAGTATACAGTGTACAGATAGCAATTTCTGCTATTGCAAATGCCGTTGTATACCTCTGCAAAGAAATTAATTGCAAAGAACCTGCCAATATTCATCCCTATGAGAAAACTGAGTTTGAAAACGATGGAAAATCACTCAGATTTGATTCAAATGGGGACATTAACCTGGGCTACAATGTGGTGGTATGGAAGTCCTTCAATGGAGACATAGATGTTGATAATACAagtgtaatttcaaaatgttcagaGAGCTGTAAACCTGGCCaatttaagaaaacatctgAAGGACAGCACACCTGCTGCTACCAATGTACCAACTGTACAGATAATCATTATTCTAATGAT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6357 lncRNA downstream 60548 30112383 ~ 30115011 (-) True G5194
TU6342 lncRNA downstream 72905 30102445 ~ 30102654 (-) True G5181
TU6209 lncRNA downstream 846444 29324741 ~ 29329115 (-) True AMCG00004006
TU6201 lncRNA downstream 905638 29183092 ~ 29269921 (-) True G5076
TU6134 lncRNA downstream 1164750 29007691 ~ 29010809 (-) True G5032
TU6435 lncRNA upstream 85214 30273806 ~ 30276224 (-) True AMCG00004041
TU6456 lncRNA upstream 349344 30537936 ~ 30538437 (-) True G5269
TU6460 lncRNA upstream 364385 30552977 ~ 30553218 (-) True G5273
TU6513 lncRNA upstream 554187 30742779 ~ 30743167 (-) True G5315
TU6530 lncRNA upstream 612171 30800763 ~ 30802575 (-) True G5330
AMCG00004032 mRNA downstream 18848 30150312 ~ 30156711 (-) True AMCG00004032
AMCG00004033 mRNA downstream 51542 30116439 ~ 30124017 (-) True AMCG00004033
AMCG00004035 mRNA downstream 97846 30058679 ~ 30077713 (-) True AMCG00004035
AMCG00004034 mRNA downstream 130167 30032565 ~ 30045392 (-) True AMCG00004034
AMCG00004022 mRNA downstream 294768 29710977 ~ 29880791 (-) True AMCG00004022
AMCG00004031 mRNA upstream 16343 30204935 ~ 30206934 (-) True AMCG00004031
AMCG00004038 mRNA upstream 19509 30208101 ~ 30220135 (-) True AMCG00004038
AMCG00004041 mRNA upstream 85321 30273913 ~ 30276227 (-) False AMCG00004041
AMCG00004040 mRNA upstream 100443 30289035 ~ 30291854 (-) True AMCG00004040
AMCG00004043 mRNA upstream 380463 30569055 ~ 30590089 (-) True AMCG00004043
TU5805 other downstream 3305981 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 4273947 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 5879783 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 5879783 24288131 ~ 24295776 (-) False AMCG00003909
TU5015 other downstream 6641677 23529519 ~ 23533882 (-) False AMCG00003893
TU6736 other upstream 2120888 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 2219210 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 2405035 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 3943506 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 4703309 34891901 ~ 34892613 (-) True G5871

Expression Profile