RNA id: TU6440


Basic Information

Item Value
RNA id TU6440
length 3305
lncRNA type sense_over
GC content 0.44
exon number 4
gene id AMCG00004039
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30296867 ~ 30307175 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACAAATTTCACTGAAATTAATAGTACCCATAGTAGATTCTTCACATTTCTAGTTtattctcattttcatttttgtatattgAGGAATATGAATCAAAACTTAAATGCTTTTTTACTTTACCTTGTTGATAAAATTAACAattccaaaacacattttcgAACACAGTGTTGTACTTAGCAAAATGTTCTCAGTTTCAGACCAATGCCCCTAATTGGCACAGAAGTTCTGAGATCCAGCTATATTTAGCTTGTCGGTGCTAAGAGGGATCTCCCCCTGCCAGAAACAGTTTGAGTGAGACAGCagctggtgagagagagagacattgagAGGAACTGAAGCACTGCACCCAGCCACACACCACTCCACATCCGTTCATTCCCCCCCACACCCAAAAGCTAGATCACTGCACTCCAAACACATGCATCCCTGACCCAGATTTTATAACTTCTTTCCCTGTAACACTTTTAGTATTATTCCCCAGCTGAACAATTCACTCTTATTGATTATAGTAACTCTGGATCACAAGATGAATCCCCACTGAGGGATCACTAATACACGAATCTGTTCTTACGTTCTTAGATGTACTCATTCTAAATGTTCTATTTAACTTCAATCAGAGTCTATTTGATGAGGTGTGGTTTCAGGCTGATTAAAAGACAGGCTAGACAGAGGTATATTGACttatttcaatattcaatattaatgtcatccataaaattaaacaaacacctTCATGTGATCTGTGAATTTaaggtgtgtatatattttttaactgcatTGAAGCGATTATACTGATATTATTCAGTATTTACCTGTTAACTGTAATAAACTGATGAGGTTTTCTCAAATGAGTAACTGGCAAGCATTCAGACCTCCAAAGTGATCAATGACTTCCTTTGGTTGCTCCCTGACAGAAATTAAACATACCAGGGCGACCAAGAGAAATGTACAGTTAATAATACAAGAAAGAAGGCCATACAGCCCACCTCCTTACAACTACTAATACAATTACAACTACAACAACtacttatattttttatttgttataataattgttattttgtacaCATCTCTGACACTGTATATCTGCTCCTTTCTTAGCAATTGGATACTCAACTTCTGGAGTGTACAGTGTGATGCTATATTAATATAGGCAGCTAGTGTCTTTCTATAGTGCTTGAATAGTTTAATAATGTCCTCTGTTATGCACAAATAgttataatacatgtaatacatCTTCGGCAGTTACATTTTATGGGACTGCAGAATCCAGGTAAGAGCCAGCGATTAGATTAAAAGCACAATAGACTATATCATTCTCACAACATGACTTGTAAAGGGCTTTTAGACGTGCTCAACATTACAGAATACTTTACAGAATCCTGCACagaacaaattaatgaatatgtGAATATGTCTGGCTTGTTCATTAGTCCAggctgtgtatttgtgtaatttattccTGGGCGGAGCTGGGCTGTGTTTAAGAATGGTGCCGAAATGCACAGAACCAATCGTGTGCTGACTGACACTGCAgactctcagtctctctctcctctcccaatGACTCGCTCAGCAACCATGGTGCCCAGCACAACTCTCCTCTCAGCTCTGCTGCTGAGTCTCTCTGTCAGCGATGATCCCATTGGCTGGGCACTGAAGACGTCCTTTTCCCAGGCTGTTATGATGCAGACGATGGTCCTGCAGGCAGCGAGGAAGAGGATCCAGGAGAAAAGGAGAGCATCCCTCTGGTCTCCACCAGTGTCGTTTCCCTTTGGCACTTCAGAGCTGTGTGGATGATCAGGAGCACCTGGTTTGGAGGCCCTTGTGTTGACCCAGCAAAAGACCCTCACATTGTCTGCTGCTGGGGGAAAGGCTGTGATATCCTGTGATGTCAACAGTGGCAGCTGGACTATTTCGTGCTACCAGCAAAAGCCTGGAACTGGGCCTGAATTCCTACTAGCTGATTCGAATAGAGCTCCTGGACTGTCGGACAGATTTTCCTACACTGAGGGGTCTTCTGGCAGAAAGGAGTAGCTGCACATCAGCAACGTGCAGAATGAGGATGAGGCTGTATACACTGTGCCTGCGTACAAGTTCAGTCCACAGTGTGAAAGTCTGTATTGTCACCCATCCAAAAACTAACAGCTATCAGACTAGTTAGAGCACCAACTTAAACAtgcttttttaaactgatttaaaatgtcagtatcTTTATGGTGGATTACACATGTCAGTGATCTCTCTAGATGTCTGACACAGTGATGTCCTTTCAAGATTCTTGGATGGATTTTCAAACGTTCTGCATGGGATACTGGTGGATTGGTCTACAAACGAAGACTCATTGAGCTGAATCATTGAGGGTTTTTGTATTGGGCTGAATCACTGTGATATGGACTCTTTGGAGGAGGAACAAAAGTTCACATTTCAAGCGGCCGCTCCCCCTCGCCCCCCATACTGACACTACTGCCCACCTCGCAGCAAGAGTTGTCTGAGCAGGGCAGTGCCACGCTGGTGTGCATGGCACAGGGCTTCTACCCTGACTCGCTGTCTGTGTCCTGGGCCAAAGAGGGTGTGGCACGTGCGGATGCAGGGGTGGTGAGCAGCAGTGCCCAGCGCCAACCTGAAGGCACCTTCACCATCAGCAGCTTCCTGAAGCTGTCAGCTGCCCAGTGGCGCTCCAGACATGCCTTCTCCTGCCGGCTCAGCCACTCGGCCCTGAGCGCCCCGCTGACCCGCAGCCGGAGCGCAAATGACTGCAGCTAGATCTAGAGGTCTCACTTACTGACACTGACCCTAACACTGACCAGACACAGACTCAAAGTACCCTGCACCCTACCCTGCCACCATACACCGACCTACACACTGACTCAGAGTACCCTGCACCCCACATTGACCCACATCtgctgactcacacacacatcccacaCACTGACCCCACAGAGCTTCActgttatttgcttaattatgcCAGAGACCCTGGAGAAGCACTAGTCTTCACCAGACTCAGTAGAGCCATATGTGTGTTATAATATAGCCAACTATGTTAAGCTTGAAGATATGCTCTCATATACACTGTTTTATCCCTTTACTGACCATGTGCTTTGTTACTGACTGTGCGCTGTGTTTTTGACCCTGTGTTGCATTACTAGCTAACTGAATCTGTAAGTCTGCAGCCCTCTCTGCCTAGCTGGTGTGCAGGTGGAGACACCCAGTGGTGAAATCTCTCCCTGCACACAGCTGTGGCTGGAGACAGAGACGGGGTACAGTCAAacttcaataaataaagcattcagAAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6434 lncRNA upstream 20585 30275108 ~ 30276282 (+) True G5248
TU6362 lncRNA upstream 150310 30145855 ~ 30146557 (+) True G5198
TU6352 lncRNA upstream 173686 30122095 ~ 30123181 (+) True G5191
TU6346 lncRNA upstream 187827 30108841 ~ 30109040 (+) True G5185
TU6294 lncRNA upstream 597643 29697667 ~ 29699224 (+) True G5141
TU6458 lncRNA downstream 238112 30545287 ~ 30545525 (+) True G5271
TU6459 lncRNA downstream 245802 30552977 ~ 30553214 (+) True G5272
TU6489 lncRNA downstream 433389 30740564 ~ 30740873 (+) True G5291
TU6495 lncRNA downstream 470872 30778047 ~ 30778270 (+) True G5297
TU6638 lncRNA downstream 685431 30992606 ~ 30992900 (+) True G5417
AMCG00004028 mRNA upstream 26669 30258472 ~ 30270198 (+) True AMCG00004028
AMCG00004037 mRNA upstream 41732 30254370 ~ 30255135 (+) True AMCG00004037
AMCG00004030 mRNA upstream 67240 30226633 ~ 30229627 (+) True AMCG00004030
AMCG00004029 mRNA upstream 94077 30201188 ~ 30202790 (+) True AMCG00004029
AMCG00004025 mRNA upstream 128995 30157362 ~ 30167872 (+) True AMCG00004025
AMCG00004045 mRNA downstream 397965 30705140 ~ 30722327 (+) True AMCG00004045
AMCG00004050 mRNA downstream 474879 30782054 ~ 30802209 (+) True AMCG00004050
AMCG00004049 mRNA downstream 497916 30805091 ~ 30807233 (+) True AMCG00004049
AMCG00004051 mRNA downstream 535545 30842720 ~ 30849036 (+) True AMCG00004051
AMCG00004056 mRNA downstream 580857 30888032 ~ 30894824 (+) False AMCG00004056
TU6431 other upstream 25343 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 2193656 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 2229081 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 4501076 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 5612947 24683400 ~ 24683920 (+) True G4360
TU6554 other downstream 580820 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 2822945 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 4545688 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 5445358 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 5965017 36272192 ~ 36274930 (+) False AMCG00004167

Expression Profile