RNA id: AMCG00004040


Basic Information

Item Value
RNA id AMCG00004040
length 1048
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00004040
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30289035 ~ 30291854 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttctggatgagctggagtgggcaggtAGCAGTGCCAGACAGGCCAGCCAGGAGTGatttgcagtagtccaggcgggagagaacCGGGACAGAACCAGGGTCTGTACAAACATAGCAGCGAGACAGGATGAGTTGTTATGGTGTTCATCTTCAATACATAGTAGACAGCTTTTTCTTCTGGGTTTTacattgtagtagtagtaagatAAGCAGTAGTGGTTGTAGTTACAACAGTTGCAGCAGCAGTGCCAGCAGTAGTAAGAGATGTAGCGGTAGTGgtaatagcagtagtagtaaataaaaattaaaatgatttaaataattttttataTTAGTCCAGGTTTCCTAGGAACTCATATCTGTACAAACACTTTTGAAAGCTGTTAAGAaacacactgcagccaaGCGCAGACAGTAAAGACTCTCCTTTGGACTCCTGAAGGAAATCTCTTCTCTCACCATGCGGGCCGGGCTTGTTctcctgtgtgtgctgtgtctgtaTCAGAGCTGCACGTCTCAGCTCCTGGGAAGAAAGTGCTATTTATTGGGGCTGTGGAAGAATGAACTGGGCTCCAACTTGTCAGTGACCGCATTGAAAAATGGATTCTTCGAAGGAGTCTACTACACAGCTGTCACCTCCCAGGAGAATTTGGTCAGCAAGGAGTCTCCTGTCTCCGGCTGGGAGCAATGGAACAAGGACACTCTTCAGCCTGTGTTCGGCTTCCTGGTCAAATGGAGCTTTGTGGAGTCAGTGACCTCCTTCGTTGGGCAGTGCTTTATGGAGAAGGATGGCACTGAGCGTCTGGAGACCATGTGGCTGATGAGAGGGcaagcagcaacagcagcagagGACTGGAAGCAGACCTGGGTTggcaaaaatgtgtttcatcGGGTGACTGGAGGACCCTCAGCAAAAAGAACATTGTGAAAGCAGTTAATCTGCATCACTACAGCTCTTCATTCAACGTTCATCAGTGATTCTGCTCATTAAATCAAGATTTGCATGTTTGCATGTCCTagtctttaaataaaaagcatcacAGAAAGCT

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6435 lncRNA downstream 12811 30273806 ~ 30276224 (-) True AMCG00004041
TU6405 lncRNA downstream 79380 30184618 ~ 30209655 (-) False AMCG00004038
TU6357 lncRNA downstream 174024 30112383 ~ 30115011 (-) True G5194
TU6342 lncRNA downstream 186381 30102445 ~ 30102654 (-) True G5181
TU6209 lncRNA downstream 959920 29324741 ~ 29329115 (-) True AMCG00004006
TU6456 lncRNA upstream 246082 30537936 ~ 30538437 (-) True G5269
TU6460 lncRNA upstream 261123 30552977 ~ 30553218 (-) True G5273
TU6513 lncRNA upstream 450925 30742779 ~ 30743167 (-) True G5315
TU6530 lncRNA upstream 508909 30800763 ~ 30802575 (-) True G5330
TU6531 lncRNA upstream 508909 30800763 ~ 30802575 (-) False G5330
AMCG00004041 mRNA downstream 12808 30273913 ~ 30276227 (-) False AMCG00004041
AMCG00004038 mRNA downstream 68900 30208101 ~ 30220135 (-) True AMCG00004038
AMCG00004031 mRNA downstream 82101 30204935 ~ 30206934 (-) True AMCG00004031
AMCG00004036 mRNA downstream 100443 30175559 ~ 30188592 (-) True AMCG00004036
AMCG00004032 mRNA downstream 132324 30150312 ~ 30156711 (-) True AMCG00004032
AMCG00004043 mRNA upstream 277201 30569055 ~ 30590089 (-) True AMCG00004043
AMCG00004042 mRNA upstream 309732 30601586 ~ 30611123 (-) True AMCG00004042
AMCG00004044 mRNA upstream 340678 30632532 ~ 30639345 (-) True AMCG00004044
AMCG00004047 mRNA upstream 434727 30726581 ~ 30733393 (-) True AMCG00004047
AMCG00004048 mRNA upstream 443042 30734896 ~ 30738621 (-) True AMCG00004048
TU5805 other downstream 3419457 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 4387423 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 5993259 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 5993259 24288131 ~ 24295776 (-) False AMCG00003909
TU5015 other downstream 6755153 23529519 ~ 23533882 (-) False AMCG00003893
TU6736 other upstream 2017626 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 2115948 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 2301773 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 3840244 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 4600047 34891901 ~ 34892613 (-) True G5871

Expression Profile