RNA id: AMCG00004043


Basic Information

Item Value
RNA id AMCG00004043
length 831
RNA type mRNA
GC content 0.53
exon number 7
gene id AMCG00004043
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30569055 ~ 30590089 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGTCGAAGCAGGTGGATGTGAAGGAGCCACAGAAGGGGGTGTTGCTGTCCTACACCATCCAGGACTTACGCATCCCTCTGTCCTATGAGGTGCGGCTCATCCCCATCACCATGTTTGGCCAGGGTGATGCCGCCACACGCATCATACAATACTCTGAGCGTGAGTACCGCCTCGCCCTGTCccgccctgccctgccctACCGCGTGTGTGGTTTCGAGGATGAGAAGCTGTGTGGGTTCAGTCAGGACCGAGGGGATGTGCCGCGGGAGCTGGGTGACAAGGCACGACTGCTCTCTCCACTCTACAATGTCACAGGAGTCAAGGGCAAGGGCTCCACCCGCACCGCTTACTGTGTCTCTTTTTACTACCACATGTACGGCAAGCACATCGGCTCTCTGAATGTGCTGTTCCGGGTGAAGAGTATTGCCACAGTGGACACACTGGCCTGGACTCGGACTGGAAACCAGGGCCCCTCCTGGAAGCAGGCAAACATCACCATCAACCCCAGCGGCCCTTTCCAggTGGTGTTCGAGGGTGTGAGGGGTAATGGCTATGAAGGGGACATCGCCATTGATGAAATCTCTGTGACCAAAGGTGGCTGTAAACTGGACAACTCCATCTCTAACACAGGGGACTGGACACACTGCCAGCATACAGACAGACTCTCCCAGACAGGCACAGAGAGGCCCTTGAAACAGACATCAGAAGTGGAGCAGTGGACgcttaacatgttttttattgaaatggaaGAAGAAGACGATGAAAAAAAAGAGCTTTATTATGAATACATTGATTTTCTgccagcaggaaaaaaaaccttgatataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6460 lncRNA downstream 15837 30552977 ~ 30553218 (-) True G5273
TU6456 lncRNA downstream 30618 30537936 ~ 30538437 (-) True G5269
TU6435 lncRNA downstream 292831 30273806 ~ 30276224 (-) True AMCG00004041
TU6405 lncRNA downstream 359400 30184618 ~ 30209655 (-) False AMCG00004038
TU6357 lncRNA downstream 454044 30112383 ~ 30115011 (-) True G5194
TU6513 lncRNA upstream 152690 30742779 ~ 30743167 (-) True G5315
TU6530 lncRNA upstream 210674 30800763 ~ 30802575 (-) True G5330
TU6531 lncRNA upstream 210674 30800763 ~ 30802575 (-) False G5330
TU6534 lncRNA upstream 223206 30813295 ~ 30813583 (-) True G5333
TU6592 lncRNA upstream 223692 30813781 ~ 30894824 (-) False AMCG00004052
AMCG00004040 mRNA downstream 277201 30289035 ~ 30291854 (-) True AMCG00004040
AMCG00004041 mRNA downstream 292828 30273913 ~ 30276227 (-) False AMCG00004041
AMCG00004038 mRNA downstream 348920 30208101 ~ 30220135 (-) True AMCG00004038
AMCG00004031 mRNA downstream 362121 30204935 ~ 30206934 (-) True AMCG00004031
AMCG00004036 mRNA downstream 380463 30175559 ~ 30188592 (-) True AMCG00004036
AMCG00004042 mRNA upstream 11497 30601586 ~ 30611123 (-) True AMCG00004042
AMCG00004044 mRNA upstream 42443 30632532 ~ 30639345 (-) True AMCG00004044
AMCG00004047 mRNA upstream 136492 30726581 ~ 30733393 (-) True AMCG00004047
AMCG00004048 mRNA upstream 144807 30734896 ~ 30738621 (-) True AMCG00004048
AMCG00004046 mRNA upstream 189776 30779865 ~ 30781766 (-) True AMCG00004046
TU5805 other downstream 3699477 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 4667443 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 6273279 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 6273279 24288131 ~ 24295776 (-) False AMCG00003909
TU5015 other downstream 7035173 23529519 ~ 23533882 (-) False AMCG00003893
TU6736 other upstream 1719391 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 1817713 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 2003538 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 3542009 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 4301812 34891901 ~ 34892613 (-) True G5871

Expression Profile