RNA id: AMCG00004045


Basic Information

Item Value
RNA id AMCG00004045
length 1608
RNA type mRNA
GC content 0.63
exon number 11
gene id AMCG00004045
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30705140 ~ 30722327 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACCAATCAATAGCATCTCTGGGTCAACCAGATGTCAGCAGCAGGCCCACATCAGCCAGCGCAGAGCCACACCTGGACTCCAACCTCCCTGGACCCCAAGCGACACAGAGAATATTGAGAGGAGAGCAATGGAGATCTGGGTTGGTCTGGGCCAACAGCTCCTCCTCTGAATTCTTGTGGCTACCTGGACAATTGGAGCTTTCTGTTACTGCCATCCAGATAAACCTCCAGCACCtttcagacagacacacatccaACCACCCTATGTTCCTGTTACCTGTGGAATTGCTAAACCCTGCACCAGTTCTATTGttagagtccCAGTGGGCCCCCGCTGGCCTGAAGCTGGAGAAAGGCTGCAGTGGGGGCTGCAATGACTCTTTGATGGGATACCAGCCCTGCCgttccccctcccctcctcacaGCCCCTCCAGCAGCCCCACCCTCCGCCTGACAATCCCCAGACACGCCGAGCCCCGAAGCAGCCCTGGCATAAAAGTTTACTGTAGCAACTTAGAATGgcGGCCCGCTCGTCCACTCCTCCACAGCGGCGGCTGTCCAAGGCTCAGCCCGCGGTCAGTATCCTACGCTGCCTGGGGGAAGGGGAGACCTCCGGCGCAACCACCCCGACACAGCCGGGGAGACAGCAACCGCGTCGAGATCTCATTTTGGACCGAGCTGCCGGCCTCCCCTCTCCGGCGGTTGGTCACGCCCTCCCTCCAGCTGATCGGCCTTGGTGCCCGCGGCCGCTCGTGTCGGCGACGCCCTCGATCCCCCGAGACCCCGTGGACAGTAAGCCGCCTGGCCCCGCCGCCTCCCTGTCCCGCAAACCGCCAGAGAAGCCTCCCAGTACCGCCAGGCCTCTACCCCATCCCCGGTCTCGCCCACCCCGCCCTGCCGACTGGAGCTATGGGGGACACGGGCAGCGAACGCAGCAAACCGCCCAGCCTCCCGCCCCGCTGCCCCTGCGGATTTTGGGGATCCAGCAAGACCATGAACCTTTGTTCCAAGTGTTTTGCTGACATCCAGAAGAAGCAGCCAGATGAGGACTGTGCCCCAGAGCCTGCCCCGAGTCCCAGtggcagccaatcagcagtgtTCTGCGGCGagaccagcagcagcagtagcccCTCCCTCACATCGCCACCGGTCAGCTCCGCCCAGCCGTCACCCAGCGACACAGGCCCCGCCTCCCCCGCAACACAGGAGGGCGTTTCAGTTTCCTGCACAGACACAGCTCATGGCACACTATCAACACCCACAAAACGGCCCTGCGACTCAGCGTTGGGGTCGGAAGATGAAGCGTCGCCGGGGAAGCGGGCGCGACAGGATGATGACGTCACAGCAGAGGAGAGCCGTGGGGGGGCCAAGCAGAGAAGCCGCCGGCGCTGCCACCGCTGCCAGACCAAACTGGAGCTGGTGCAGCAGGAGCTGGGGTCCTGCCGCTGCGgCTATGTGTTCTGCATGCTGCACCGCCTGCCCGAGCAGCACGACTGTCTGTTCGACCACCTGGGCCGTGGCCGCGAGGAGGCCGTGCTGAAGATGGTGAAGCTGGACCGCAAGGTTGGGCGCTCGTGCCAACGCATTGGCGAGGAGTGCTCCTGA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24686 ZFAND3; AN1-type zinc finger protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6459 lncRNA upstream 151926 30552977 ~ 30553214 (+) True G5272
TU6458 lncRNA upstream 159615 30545287 ~ 30545525 (+) True G5271
TU6440 lncRNA upstream 397965 30296867 ~ 30307175 (+) True AMCG00004039
TU6434 lncRNA upstream 428858 30275108 ~ 30276282 (+) True G5248
TU6362 lncRNA upstream 558583 30145855 ~ 30146557 (+) True G5198
TU6489 lncRNA downstream 18237 30740564 ~ 30740873 (+) True G5291
TU6495 lncRNA downstream 55720 30778047 ~ 30778270 (+) True G5297
TU6638 lncRNA downstream 270279 30992606 ~ 30992900 (+) True G5417
TU6715 lncRNA downstream 1064007 31786334 ~ 31786883 (+) True G5482
TU6723 lncRNA downstream 1306677 32029004 ~ 32029301 (+) True G5490
AMCG00004039 mRNA upstream 397996 30303391 ~ 30307144 (+) False AMCG00004039
AMCG00004028 mRNA upstream 434942 30258472 ~ 30270198 (+) True AMCG00004028
AMCG00004037 mRNA upstream 450005 30254370 ~ 30255135 (+) True AMCG00004037
AMCG00004030 mRNA upstream 475513 30226633 ~ 30229627 (+) True AMCG00004030
AMCG00004029 mRNA upstream 502350 30201188 ~ 30202790 (+) True AMCG00004029
AMCG00004050 mRNA downstream 59727 30782054 ~ 30802209 (+) True AMCG00004050
AMCG00004049 mRNA downstream 82764 30805091 ~ 30807233 (+) True AMCG00004049
AMCG00004051 mRNA downstream 120393 30842720 ~ 30849036 (+) True AMCG00004051
AMCG00004056 mRNA downstream 165705 30888032 ~ 30894824 (+) False AMCG00004056
AMCG00004059 mRNA downstream 174749 30897076 ~ 30913151 (+) True AMCG00004059
TU6431 other upstream 433616 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 2601929 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 2637354 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 4909349 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 6021220 24683400 ~ 24683920 (+) True G4360
TU6554 other downstream 165668 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 2407793 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 4130536 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 5030206 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 5549865 36272192 ~ 36274930 (+) False AMCG00004167

Expression Profile