RNA id: AMCG00004060


Basic Information

Item Value
RNA id AMCG00004060
length 2371
RNA type mRNA
GC content 0.58
exon number 7
gene id AMCG00004060
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30969679 ~ 30973496 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCTTTCCCACGCTGCTCCAGCATGGCGACTGTCAGAGAGGAAGGTGTGTGTAAGTGACTGATCCAGGCAGGGGGCGACCGCCGAGGGACTAAACCCGGAGCCAACGCAGGACTGCTCTCCCTGCAGCCGGCCTGGTATGATCTGATCACCTGTCAAAACCGACGGAGGGCAGCGCGACTTTCTTCAACACTGCTTTGTACATGGTGCGCATCGTCCGTAGTAGCAGTGCGGATACAACCGCACACTGAAGGAAAACCCGACCCGCAGGAAAAAGGTTCCTACCCGTAGGTGTTGTTGTGTTTAGGAGGAAGAAAAGAGCTGGACTCGCATGGGTAGATGTGGTGTGTGTCTGCCGGGTGCATCAGTCCCATGTGGGAACCGTGTCCTTGGACTCCACTAACGGAATATGCTAGTAGTCTGTACAGTAGCTGCTGCGTCTGTTTGTAAAACGTTAGTGATATTAAGTGAGgtctttaaacaaaatgatcaaaagtaatgcaaatacattatacaaaataagttGCACACAGTTAATATATGCTCATGGGGTGGTGGGAGTTCTGTGGTGTGTAATTACTACAAAACTATCTGaatattgtattactgcacacagtttacatttatatatagactTTTTGAAGTTGTGCTGTGCAGATGTGGGGGGGTGCGTGCAGGTTCTGGCAAGCGGGCCAGCTGTGTGCCCGGGCGCGGGGGGCGTGGAGCATACTGGGGAGAAGGGGGTGTgaggtggagggagagggacaggtATTCAACCGCCCAGGAGGGGGTCACAGACTCTTTGGATTAGCACCCCCTGGGGAGGGTGAAGAGAGTAGGGGGAGCCGAGTGAGGAGTGAGGATGAGAGTCCAGACACCCAGGCTGGCTCTTCCCCACCTCAACCACTGCCCCGGACTGGGGTGCCACCCCTCGGCTTGAGCCTGAGGGCCAGACATCGATCCCTGTCACCCCTGGAGAGACTCAGCCGCCTGCTGCCCCTGGACTCCCTGACACAAGAGGTGAGGgagctgagagagagcgagggaggggaGACGCAGGGGtatggagagagacagatgcaGGGAGAGAGACTGCCTGAAGGGCCCACATGGGGAGATTGCAGCTCTATGGATGGGGAGTATGGAGACTCTGGGTGTTCCAAGAGCCAAGTCCCAGGAACCCCAAGCAACACCCCCATCCCCATTATCCCCAGGGAGCTGCCCCTGCACCCAGGGGAGCTGGTGCTGGCGGAGTATCGGCGTAAGGGACAGCTGGAGTTCCGGAAGATGTTTGAGCTGAACGAGGGGGGGCAGCTGCACAGTAACTGGGGGTCCCTGGCCCACAGCGCGGTCCTGGGGCACCCCTCGGGCACCTTGGCCCTCACCTCCACAGGCACTCCCCTGCTGCTGCGCCGGCCCAGCCTGGAGGAATATGCCCTGCTGATGAAGAGGGGCCCCACCATCGCCTACCCCAAGGATGTCAGtgcgatgatgatgatgatggatgTGTGTGAGAGGGACAGTGTGCTGGAGTCGGGGTCAGGGTCCGGGGCCATGTCTCTCTTCCTGTCCCGCGCAGTGGGCTCTGGGGGTCGGGTACTCAGTGTGGAGCTGCGGAAGGACCACCACAGGAGGGCACTCCTGAACTACCAGCGCTGGCGAAAGTCTTGGGGCATGGCCCGTGATGGAGCCTGGCCTGACAATGTGGAGTTTGTCAACAAAGACTTGAGCAGTGCTGCTGACCTGCTGGAGGGGCGGAGCTTCCATTCAGTGGCTCTGGACATGCTGAACCCCCAGGTAGTGCTGCCCACTGTGTTCCCTCACCTGTGGAATGGGGGTGTCTGTGCAGTCTACCTGGCCAATATCACGCAGGTGGTGGACCTGCTGGAGGGTGTACGCAATGCCGGTCTGCCCCTGCTGTGTGAGCGGGTCATTGAGGTCACGCACAGGGACTGGGTGGTGGCCCCAGCGATCCGGAAGGATGGCAGCCGGGCCCCCAGATTCCTGTCCACTGGGGTCAAGGGTCAGCATGacgaggagaaggaggaggagggggagccATCATGTGACCAAGAAGGAGAGACTTTGGGACGACGTGACTCAAGGTCGTTAGAGACAGTGCCCTACATCGCCCGGCCCCATCACGAACAGGGCAGCCACACAgCATTCCTGGTGAAGCTGAGGAAGGTGGTGCCAGTGCCACACCACTCCAGGTCGGGGAGGATGGAGGGTCCGGGCGCCGACACAGAAGACCCCAGCAGCCACATTGGCCAGCCGTGACAGTCACAAGCAAGCCTGTCTTTCCtggaaatgttgtttttgttgttgctgctgttgtgtctaattaaatattttattaaactgctCTGTTT

Function

GO: NA

KEGG:

id description
K07442 TRM61, GCD14; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6606 lncRNA downstream 10565 30890186 ~ 30959114 (-) True G5393
TU6592 lncRNA downstream 74855 30813781 ~ 30894824 (-) False AMCG00004052
TU6597 lncRNA downstream 123378 30843678 ~ 30846301 (-) True G5387
TU6534 lncRNA downstream 156096 30813295 ~ 30813583 (-) True G5333
TU6530 lncRNA downstream 167104 30800763 ~ 30802575 (-) True G5330
TU6654 lncRNA upstream 15376 30988872 ~ 30990100 (-) True G5432
TU6696 lncRNA upstream 396504 31370000 ~ 31371409 (-) True G5463
TU6698 lncRNA upstream 413088 31386584 ~ 31387033 (-) True G5465
TU6700 lncRNA upstream 560451 31533947 ~ 31534379 (-) True G5467
TU6709 lncRNA upstream 697867 31671363 ~ 31671579 (-) True G5476
AMCG00004063 mRNA downstream 13793 30950855 ~ 30955886 (-) True AMCG00004063
AMCG00004062 mRNA downstream 23689 30940156 ~ 30945990 (-) True AMCG00004062
AMCG00004061 mRNA downstream 32370 30932303 ~ 30937309 (-) True AMCG00004061
AMCG00004053 mRNA downstream 87171 30860092 ~ 30882508 (-) True AMCG00004053
AMCG00004054 mRNA downstream 113620 30850875 ~ 30856059 (-) True AMCG00004054
AMCG00004068 mRNA upstream 39649 31013145 ~ 31022165 (-) True AMCG00004068
AMCG00004069 mRNA upstream 93815 31067311 ~ 31075673 (-) True AMCG00004069
AMCG00004070 mRNA upstream 103417 31076913 ~ 31091307 (-) True AMCG00004070
AMCG00004072 mRNA upstream 346099 31319595 ~ 31320594 (-) True AMCG00004072
AMCG00004074 mRNA upstream 564412 31537908 ~ 31539407 (-) True AMCG00004074
TU5805 other downstream 4100101 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 5068067 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 6673903 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 6673903 24288131 ~ 24295776 (-) False AMCG00003909
TU5015 other downstream 7435797 23529519 ~ 23533882 (-) False AMCG00003893
TU6736 other upstream 1335984 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 1434306 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 1620131 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 3158602 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 3918405 34891901 ~ 34892613 (-) True G5871

Expression Profile