RNA id: AMCG00004072


Basic Information

Item Value
RNA id AMCG00004072
length 747
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00004072
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 31319595 ~ 31320594 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGAACAAGGGACTGCATCTCTTACTTTTCTCAGCGGTGTGTCTGACCGAACTGCGGTGCACTTCCCAAAAGGTCCCTCTGTCCACCGCCAACATTACTGGCAGTGGGGATGCCAGCGGCAAGAAGGACACCAACCAGACCTACTTTTCCCGACTCAAGAGGAAGAACCTGTCCGTGGATTTTGTCATCCCGTCTCTCTTCCGAACCTACCTGTCTGAGCTGATCAAGCGCCCGCTGGACGGCCAGTGCCAGGATTACAATGCGTGCTACACCGTGCAGTCCCACTTGAAGATGCAGTGCGTCCCCTTGCAGAAAACCGTGTCCAGTTTCCTGGAGTCCAAGTTGAGGACGGCCGACAGCGCGGAGAGGGACAACGCCACGGCCGCTGGACAGCTCCCCGACAGCAGGCGCAGGCGGCCTCTGTCCAAGGTGCTGAATCTGGGGCTCAGCAAGGCGAGCCGCAAATCCAACCAGGTGGTGGTGGAGATCGGGGAAAAGGTGGTCCGGACGGGCTGCGGTGGACTTACAGCTGACGAGGACGCCCCACCGGTCATCCTGGAGATGGACCTCACTAGGATGTTGCAGTGGTGGCTGGGCGCCGAAGGGGGCCGGCTACGGGTCCGGCTCATGCCCGAGAGGAGAGCGCAAATaccagggagagaggagaagtaCTCCGCTGCGATCAGAGCGGCAGATGCCCGCCTCTTTTTGCAGATCACCTCCCGAGTAACATTTGAGAAATAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6654 lncRNA downstream 329495 30988872 ~ 30990100 (-) True G5432
TU6645 lncRNA downstream 346103 30972820 ~ 30973492 (-) False AMCG00004060
TU6606 lncRNA downstream 360481 30890186 ~ 30959114 (-) True G5393
TU6592 lncRNA downstream 424771 30813781 ~ 30894824 (-) False AMCG00004052
TU6696 lncRNA upstream 49406 31370000 ~ 31371409 (-) True G5463
TU6698 lncRNA upstream 65990 31386584 ~ 31387033 (-) True G5465
TU6700 lncRNA upstream 213353 31533947 ~ 31534379 (-) True G5467
TU6709 lncRNA upstream 350769 31671363 ~ 31671579 (-) True G5476
TU6716 lncRNA upstream 465740 31786334 ~ 31786944 (-) True G5483
AMCG00004070 mRNA downstream 228288 31076913 ~ 31091307 (-) True AMCG00004070
AMCG00004069 mRNA downstream 243922 31067311 ~ 31075673 (-) True AMCG00004069
AMCG00004068 mRNA downstream 297430 31013145 ~ 31022165 (-) True AMCG00004068
AMCG00004060 mRNA downstream 346099 30969679 ~ 30973496 (-) True AMCG00004060
AMCG00004063 mRNA downstream 363709 30950855 ~ 30955886 (-) True AMCG00004063
AMCG00004074 mRNA upstream 217314 31537908 ~ 31539407 (-) True AMCG00004074
AMCG00004073 mRNA upstream 238089 31558683 ~ 31568015 (-) True AMCG00004073
AMCG00004077 mRNA upstream 1010732 32331326 ~ 32333781 (-) True AMCG00004077
AMCG00004076 mRNA upstream 1029359 32349953 ~ 32363126 (-) True AMCG00004076
AMCG00004091 mRNA upstream 1292502 32613096 ~ 32650701 (-) True AMCG00004091
TU5805 other downstream 4450017 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 5417983 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 7023819 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 7023819 24288131 ~ 24295776 (-) False AMCG00003909
TU5015 other downstream 7785713 23529519 ~ 23533882 (-) False AMCG00003893
TU6736 other upstream 988886 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 1087208 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 1273033 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 2811504 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 3571307 34891901 ~ 34892613 (-) True G5871

Expression Profile