RNA id: AMCG00004073


Basic Information

Item Value
RNA id AMCG00004073
length 2304
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00004073
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 31558683 ~ 31568015 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACAAAGTGTTCTGCAGCCTCCTGATTCTGGGATCCGCAGTGATGATGGCCCATGCATGCCCAAAATACTGTGTCTGCCAGAACCTCTCTGAGTCGTTGGGCACACTCTGTCCATCCAAAGGCCTCCTGTTTGTGCCTCCAGACATTGACCGCCGGACTGTGGAGCTTCGGCTCGGTGGCAACTTCATCATCCGGGTCACCCAGCAGGACTTTGCCAATATGACAGGGCTGGTGGACCTTACGCTGTCCCGCAACACCATCAGCTCCATCCAGCCCTTCTCCTTCATCGACCTGGAGACGCTGCGCTCCCTGCACCTTGACAGCAACCGTCTGACAGAGATAGGTGCGGATGACCTCCGCGGCCTCATCAACCTCCAACACCTCATCCTCAACAACAACCAGCTCAACTGGATCTCTGATGAGGCATTTGAGGACTCCCTGGCAACCCTGGAAGACGTAGACCTCTCCTACAACAACTTGCGGGGGGTGCCCTGGGACTCCATCCGCAAGATGGTCAACCTGCATCAGCTCAGCCTGGACCACAACCTCATCGATTATATCGTAGAGGGCACCTTCACTGATCTGCAGAAACTGGCTAGGCTGGACCTCACCTCCAACCGGCTTCAGAAGCTGCCACCAGACCCCATCTTCGCCCGCTCCCAGAACAATGTGGTGCTCACCACTCCATATGCCCCTCCACTGGCACTCAGCTTTGGAGGCAACCCCTTGCACTGCAATTGTGAGGTGTTGTGGCTGCGAAGGCTAGACAGAGAGGATGACATGGAGACTTGTGCTTCCCCTCCCAGCCTGAAGGGTCGATATTTCTGGTACATCAAGGAGGAGGAGTTTGTCTGCGAGCCTCCTCTCATCACCCAGCACACCCACAAGTTGCTGGTGCTGGAGGGTCAAACTGCCAGCCTGAAGTGCAAAGCCATTGGTGACCCAATGCCCATCATTCACTGGGTTGCCCCTGATGATCGCTTGATCGGTAATTCTTCCCGGGCGGTCGTCTATGACAACGGCACTCTAGACATTATGATAACCACCTCCAAGGACTACGGGACCTTCACCTGCATCGCAGCCAACGCAGCTGGAGAGTCCACTGCTTCCATAGAACTCTCCATCATCCAGCTCCCCCACCTCAGCAATGGTACCGGCCGCACCTCCCAACCAAAGTCCAGGCTCTCTGACATCACCAGCTCAACCAAGACTAGTAAAGGGGAAACAAAGAGCCCACCTGAGAGGGTGGTGTCAGTGTCAGAGGTGACCGCAGTCTCTGCCCTGGTCAAATGGTCGGTGAGCAAAGCAGCGCCCAAGGTGAAGATGTACCAGCTCCAGTATAACTGCTCTGATGATGAAGTGCTGATTTACAGGATGATCCCGGCATCTAGCAAAGCCTTTCTAGTGACCAACCTGGTGTCAGGAGTCCAGTATGACCTGTGTGTCCTGGCCATTTGGGATGACACCGCCACTACCTTGACTGCCACCAATGTGGTGGGCTGTGTGCAGTTCATCACCAGGGAGGACTATCCTCAGTGCCAGTCATTGCACAGCCAGTTCTTGGGTGGAACCATGATCCTGGTCATCGGTGGCATCATTGTAGCCACGTTGCTGGTCTTCATTGTCATCCTGATGGTCAGGTACAAAGTCTGCAGCAGCGCAAACTCAGGAAAGCTGCCCAATGTCAGCAACACTTACTCACAGACTAACGGGGGTCACACTGTCCACAATGGGGTGCTGCCCCAGGTGAACCCCAAAGTTGTAGTGCGGGATGAACTGATGGAGTTTAACTGTGGCTCTTTGCAGAGTAgcctgtcctcctcctccagctcgcTGGCCAGCAGGGACTGCGACGACTACAGCCTGCACAGCGACAAGAGCACTCTGTCCAACAAGTGGAGGCCTGTCACCTCCAGGTCACGGCCCAACCTGGACCACCTCCTGGGCGCCTTTGCCTCTCTGGAACTGAGGGCCCAGAAAAGAGAGCCGGGACCCTCAGAGTCAGGGGCCTCCACACTCGCCCCCCACTCTGACAAGGAGCCCCTGCTGGGGCGAGGGGACTCCAAGCTCAAAAGCCTTCTCATGTTACCTCTGGAGAGCAAGCCCAAGCGGAGCCACTCCTTCGACATGGGGGACTTTGCCACCACACAGTGCTGCAGCTACCCCAAAAAGATCACTAACATCTGGACTAAGAGGAGCCTCTCGGTCAATGGGATGCTCCTACAGTATGATGAGGGAGACCTAGAGGGGAGCAAAGCAAACTACGAGAGCTCTGAGTGGGTGATGGAGAGCACTGTTTAA

Function

GO: NA

KEGG:

id description
K16355 LRFN2, SALM1; leucine-rich repeat and fibronectin type-III domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6700 lncRNA downstream 24304 31533947 ~ 31534379 (-) True G5467
TU6698 lncRNA downstream 171650 31386584 ~ 31387033 (-) True G5465
TU6696 lncRNA downstream 187274 31370000 ~ 31371409 (-) True G5463
TU6654 lncRNA downstream 568583 30988872 ~ 30990100 (-) True G5432
TU6645 lncRNA downstream 585191 30972820 ~ 30973492 (-) False AMCG00004060
TU6709 lncRNA upstream 103348 31671363 ~ 31671579 (-) True G5476
TU6716 lncRNA upstream 218319 31786334 ~ 31786944 (-) True G5483
TU6724 lncRNA upstream 460938 32028953 ~ 32029406 (-) True G5491
TU6727 lncRNA upstream 623305 32191320 ~ 32191542 (-) True G5494
TU6734 lncRNA upstream 700690 32268705 ~ 32269226 (-) True G5500
AMCG00004074 mRNA downstream 19276 31537908 ~ 31539407 (-) True AMCG00004074
AMCG00004072 mRNA downstream 238089 31319595 ~ 31320594 (-) True AMCG00004072
AMCG00004070 mRNA downstream 467376 31076913 ~ 31091307 (-) True AMCG00004070
AMCG00004069 mRNA downstream 483010 31067311 ~ 31075673 (-) True AMCG00004069
AMCG00004068 mRNA downstream 536518 31013145 ~ 31022165 (-) True AMCG00004068
AMCG00004077 mRNA upstream 763311 32331326 ~ 32333781 (-) True AMCG00004077
AMCG00004076 mRNA upstream 781938 32349953 ~ 32363126 (-) True AMCG00004076
AMCG00004091 mRNA upstream 1045081 32613096 ~ 32650701 (-) True AMCG00004091
AMCG00004090 mRNA upstream 1095649 32663664 ~ 32671871 (-) True AMCG00004090
AMCG00004094 mRNA upstream 1395025 32963040 ~ 32974811 (-) True AMCG00004094
TU5805 other downstream 4689105 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 5657071 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 7262907 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 7262907 24288131 ~ 24295776 (-) False AMCG00003909
TU5015 other downstream 8024801 23529519 ~ 23533882 (-) False AMCG00003893
TU6736 other upstream 741465 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 839787 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 1025612 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 2564083 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 3323886 34891901 ~ 34892613 (-) True G5871

Expression Profile