RNA id: AMCG00004077


Basic Information

Item Value
RNA id AMCG00004077
length 1242
RNA type mRNA
GC content 0.66
exon number 4
gene id AMCG00004077
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32331326 ~ 32333781 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGCGCTACTGGGGGGAGATCCCGGTGCCGGCTGGGCCACCCAGCCGCAGCTCTTTTGACCTGTTGCAGCGGGAGTTCCGCTCAGTGGAGGTGCAGGACCCCCCGCTGCACCAGCCCTCCGCCCAGCGCCCACGGCCCACCACCATGCTGGACGTGCCCTCCGAGCCCTGCAGCCTGACCATCCACACCGTGCAGCTGTGCCAGCATGCTCGCCGCCTGCGGAGCCTCCTCGCTACTGCACAGGGTCAACCCCCAGCGGAGGGCGGGGGGAGGCCAGAGGACACTGAcaccctgcccccccgcccccccacgcCTGCCCTGCCCGATGACCTGTTGCCCCTCGACAGCAAGGCCCCCCGCCAGCCCTTCCAGCTGCGCCACAGCGACCCCGAGAGCGATTTCTATAAAGGTAAAGGGGAGCCGGTGACAGAGCTGAGTTGGCCGTCCTGCCGGCAGCTGCTGTACCAGTCTGTGGCCACGGTACTGGCCCATGCTGGGTTTGAGACGGCACAGGAGAGCGTACTGGAGACTTTGACGGACGTGGCGCATGAGCACTACCTGCGCCTGAGCCGACTGCTGCGTGTGGCAGTGGACCGTGAGGCCCGGCTGGGGGCCACTCCCTTCCCTGACGTGGTGGAGCAGGTGTTCCATGAGGTGGGCATCGGTAGCGTGCTCGCCCTGCAGCGCTTCTGGCAGCACCGCATCAAGGACTACCACAGCTACATGCAGCAGGTGAGCCGGGAGCTGTCGGAGGAATATGAGCGGCTGGTGAACCCAGAGAAGGCTGCAGAGGACTCCAAGCCCCTCAAGATCAAGGAAGAGCCTCTGAGTGACATTGCCTTTCCTGTCAGCGAGGAGCCTGAGGCCGACCTGGCGTCTGGGGACCAGGCCCTGCCCATTGGGGTCTTGGGGGCCCCCAGTGAAAGGCTGCCTAGTGGGCTGGAGGCAGAGAACTCCCCACATACTGCAGGGACGGCAGGCACCAGCTCTCCACTGTGGCAGTTGGCGCAGGTGAAGATGGAGCCACAGGATGGAGAGGACGGACAAGTGTCAGGGCACGGTGTGCTGGGAGGAGACGTGTTTGAGGAGCCCATGTCCACCATGAGCGAGGCCGGCCTCCCACACTCGCCCAGCGCGGCCGGCTCCGACGCCAGCTACGGCTCGCACTCCCCGGACAGCATCATGGGGGCCTCACCTGTCTTCAATCAGCGGCCCAAGAAGCGCCACAAGAAGATGTGA

Function

GO: NA

KEGG:

id description
K11316 SUPT7L; STAGA complex 65 subunit gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6734 lncRNA downstream 62100 32268705 ~ 32269226 (-) True G5500
TU6727 lncRNA downstream 139784 32191320 ~ 32191542 (-) True G5494
TU6724 lncRNA downstream 301920 32028953 ~ 32029406 (-) True G5491
TU6716 lncRNA downstream 544382 31786334 ~ 31786944 (-) True G5483
TU6709 lncRNA downstream 659747 31671363 ~ 31671579 (-) True G5476
TU6772 lncRNA upstream 49628 32383409 ~ 32383683 (-) True G5528
TU6781 lncRNA upstream 53965 32387746 ~ 32388969 (-) True G5536
TU6785 lncRNA upstream 58102 32391883 ~ 32392110 (-) True G5539
TU6801 lncRNA upstream 193902 32527683 ~ 32529838 (-) True G5552
TU6804 lncRNA upstream 211596 32545377 ~ 32547006 (-) True G5555
AMCG00004073 mRNA downstream 763311 31558683 ~ 31568015 (-) True AMCG00004073
AMCG00004074 mRNA downstream 791919 31537908 ~ 31539407 (-) True AMCG00004074
AMCG00004072 mRNA downstream 1010732 31319595 ~ 31320594 (-) True AMCG00004072
AMCG00004070 mRNA downstream 1240019 31076913 ~ 31091307 (-) True AMCG00004070
AMCG00004069 mRNA downstream 1255653 31067311 ~ 31075673 (-) True AMCG00004069
AMCG00004076 mRNA upstream 16172 32349953 ~ 32363126 (-) True AMCG00004076
AMCG00004091 mRNA upstream 279315 32613096 ~ 32650701 (-) True AMCG00004091
AMCG00004090 mRNA upstream 329883 32663664 ~ 32671871 (-) True AMCG00004090
AMCG00004094 mRNA upstream 629259 32963040 ~ 32974811 (-) True AMCG00004094
AMCG00004095 mRNA upstream 648682 32982463 ~ 32985504 (-) True AMCG00004095
TU6736 other downstream 21416 32309480 ~ 32309910 (-) True G5502
TU5805 other downstream 5461748 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 6429714 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 8035550 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 8035550 24288131 ~ 24295776 (-) False AMCG00003909
TU6786 other upstream 74021 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 259846 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 1798317 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 2558120 34891901 ~ 34892613 (-) True G5871
TU7292 other upstream 2627179 34960960 ~ 34963839 (-) False AMCG00004132

Expression Profile