RNA id: AMCG00004094


Basic Information

Item Value
RNA id AMCG00004094
length 2036
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00004094
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32963040 ~ 32974811 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGATTCTAAGACTGTCAGTTTGTTCTGCACACATCCAGAGGACTTCTACCTTTCACTGCCAGATTTTCTACTTCTAACAGCTTCTGAACACATTCTGTACAATATCCTGCTCAGCCAAGAACAATCGCAATGAGTGAGACaaaagtatttaCAACCTCTTGCATTGACCTGGAAAGCTTTGTGTCAGCGAAAGCAGAACTGAGCAGGGGAGGCCTACTGGATTCTGTCCTTAAGTGCAATCTGGAGTATGCCATGGAGGCGCTGGATGCCATGCCAGTCATCAAGAGGACCAATGTCTCCCTGCTGATTGAAGGCGACCAGCAACTGATGAAGTTCACCTGTGACAACCCTGTGATCCACTACACTGTGAAACTAGTGAGGAACATCCCAGAACTGCAGCAGAAGGTCTATGTTTGGAACAAGCTGATGCCGTCTAATGTGGAGGCTTTCCACTTTTCAGGGCACCATTGCCAGGATGAGTTTGAGCCCTGCCATAAGCAAGCTCTGAAGGCTGTGACAGAGAAAGGATTGGTCAACACAGCACTGGAAATCATCTGCAATGACTTCCACCTCACCTACAGCACCCTTCAGCCAGACAGCACTGTCACTGTGAAGACCAAATGCAGGATCAATCTGGGCCACTTGTTGTCCTTGCAGAAAATCCTGGAGGTGAAGACCGAGATGGAGCAGAAGAAGATCATGGGCAAAGGTCTTCTGGCCTGCTTCCAACACCTGCTGGTGCACTACACACAATATAAAGAATCAAATGTCAAACTCATCCTTCAAAGCGAGGGGCAAATCATAGAGTTAATCAGAGGCAAACATGACTGTCTGGATGTGGAGTATTATATCTTCGTCAATGCCAAAAATGAAACCCAGAGCCAACGTGTCGACTTGTATCAGCCTTGGGCTTATGATTAGGAGAAATACTTCACCCTAAAAGCTCCTGAAACCTGTATAGCACTTCTAGTGAGTGTTTCCTCTCACTTTTATGTTAGTCGGCATCAAATCAACTAATATTCACTGTCTGATCAACAATTAAACTGCTCTTACTGAAAAGGCACTTTTAATCTAATGgacacattgaaataaaaaggtttaatCCTGCAGCAATAATTACACGAATTACACAATGCCACTAGACTGAATTTAAAGGAAAGCctaaaataattgcaatatgAAATAACTCAATTTCAAAATAGGTGTTTTTAAACTAATAGAAAaccattttttggtttgtttaattggCGAATCAAtgagatatataaatattgtaattccAAGGACAGTGTGAAAAAGAGGATGGCTcgtattaagaaaaaaaacttgaatttcCATATAATTCCAAGAATGTACTTTCCCTGAACACAACAACATGTGCCATGAAATCAAATTATTCCCTGAATCCTGGAATAGAGGGTTATTAGTGTTGATAAGTGTAAACAAGACAATTAGGTCAGGGACATTGGATTACAATTATGAAGAAGAATATGTCAGGGATGTACATCACAAAGCTTCTCATGTGGATTTTGCCTCTGCTGACAGTGTTGATTGATGCAACAACATACTGTCACTGTTCTTATTCTTACAGCACCTGCTCAGCATGCACACGCTGGCACCACTGTTACATATTCCACAAGCTGTTTCTCGGTTTCCCATTGACTCTTTGAAATTATACTGATCTCTCTCCTGTGGCAGGATACCTAATATGTGTCAGTCTTTCAgagcaaattattatttgtttcagcCCACAACCTCAACTGCTCACAGCAATCCATAGCAAACCCcaagaacaggaaaaaaaaacagcaagccTTCAACTTCTATTTGCTTAAGTGTAATACCCTTATGGTGCAGAAGAAACATGTCCAAATGTTGTATTGACTTCCCAGTTGGAAAAAAGTACTGTAATGTAAAGTTTACCGgatttttcaatgttttattcattgtaGTAATGTTATGATAAAGAACCAATTTTCGGTAGATGTATCTGTTATTGTAATGATTGTCTAATTGTAAAAAATCTACATTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6820 lncRNA downstream 351696 32604888 ~ 32611344 (-) True G5570
TU6804 lncRNA downstream 416034 32545377 ~ 32547006 (-) True G5555
TU6801 lncRNA downstream 433202 32527683 ~ 32529838 (-) True G5552
TU6785 lncRNA downstream 570930 32391883 ~ 32392110 (-) True G5539
TU6781 lncRNA downstream 574071 32387746 ~ 32388969 (-) True G5536
TU6922 lncRNA upstream 129914 33104725 ~ 33105215 (-) True G5645
TU6983 lncRNA upstream 591362 33566173 ~ 33567325 (-) False AMCG00004102
TU7015 lncRNA upstream 651498 33626309 ~ 33627507 (-) True G5721
TU7105 lncRNA upstream 900630 33875441 ~ 33918321 (-) True AMCG00004116
TU7119 lncRNA upstream 1040626 34015437 ~ 34019511 (-) False AMCG00004120
AMCG00004090 mRNA downstream 291169 32663664 ~ 32671871 (-) True AMCG00004090
AMCG00004091 mRNA downstream 312339 32613096 ~ 32650701 (-) True AMCG00004091
AMCG00004076 mRNA downstream 599914 32349953 ~ 32363126 (-) True AMCG00004076
AMCG00004077 mRNA downstream 629259 32331326 ~ 32333781 (-) True AMCG00004077
AMCG00004073 mRNA downstream 1395025 31558683 ~ 31568015 (-) True AMCG00004073
AMCG00004095 mRNA upstream 7652 32982463 ~ 32985504 (-) True AMCG00004095
AMCG00004096 mRNA upstream 39717 33014528 ~ 33022148 (-) True AMCG00004096
AMCG00004098 mRNA upstream 76326 33051137 ~ 33106380 (-) True AMCG00004098
AMCG00004097 mRNA upstream 147781 33122592 ~ 33132313 (-) True AMCG00004097
AMCG00004103 mRNA upstream 579599 33554410 ~ 33556854 (-) True AMCG00004103
TU6815 other downstream 366633 32593627 ~ 32596407 (-) True G5566
TU6786 other downstream 536477 32407802 ~ 32426563 (-) True G5540
TU6736 other downstream 653130 32309480 ~ 32309910 (-) True G5502
TU5805 other downstream 6093462 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 7061428 25897934 ~ 25901612 (-) True G4521
TU7138 other upstream 1157287 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 1917090 34891901 ~ 34892613 (-) True G5871
TU7292 other upstream 1986149 34960960 ~ 34963839 (-) False AMCG00004132
TU7345 other upstream 2379810 35354621 ~ 35414446 (-) False AMCG00004143
TU7893 other upstream 4393174 37367985 ~ 37368822 (-) True G6441

Expression Profile