RNA id: AMCG00004096


Basic Information

Item Value
RNA id AMCG00004096
length 951
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00004096
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33014528 ~ 33022148 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGCCCGTGGCTCAGCAGCCCAGCTCCCCAAATCGTACGAGCCAGAGCCTGCGGCCAAGTACGGCACTCTGGACGTGGTGTTTGACTACGACTCGGAGGAGCAACGGCTGCTGGTTACGGTGACGGCCGTGACAGACATCCCTGCCCTGAAGAGGACTGGGAACATCTCCTGGCAGGTCCACCTGGTCCTGCTGCCCACCCGCAAACAGAGGGCCAAGACGGGCATCCAGAAGGGGCCCTGTCCCGTCTTCACAGAGACGTTTAAGTTCAGCCGCATTGAGTCGGAGATGATCGGGAACTACGCCGTGCGCTTCCGCCTCTACAGCGTGCGGCGCATGAAGAGGGAGAAGGTTCTGGGGGAGAAGGTGTTCTACCTCACCAAGCTCAACCTGCAGGGCAAGATGTCCGTGCCCGTGACCCTGGAGCCGTGCTGCAGCCTCACAGGCTGTGACTCTCAGATGAGTATCTCGGAGATGTCCTGCAGTGAGAGTGCCTTGTCCTTCCAGTCAGTGGGTCAGGGCTCCACGCCAGAGATCCTGGTGGGGCTCATCTACAACGCCACCACGGGACGGCTCTCCGTGGAAGTCATCAAGGGCAGCCACTTCAAAAACCTGGCAGCCAACAGACCACCCAATACGTATGTTAAGCTCACCTTGTTGAACTCAATGGGCCAAGAAATGTCCAAGTGCAAGACGTCCATCTGCCGGGGACAACCAAACCCCACCTACAAGGAGACTTTCATTTTCCAAGTTGCACTTTTCCAGCTGTCAGATGTGACTCTCATTCTCTCCGTTTACAACAAGCGGAGTATGAAACGCAAGGAGATGATCGGCTGGATCTCGCTGGGGCTCAACAGCTCAGGAGAGGAGGAGCTCAACCACTGGACAGAGATGAAGGAGTCCAAGGGACAACAAGTGTGTCGGTGGCACACGCTGTTAGAGTCCTAA

Function

GO: NA

KEGG:

id description
K19328 SYT14_16; synaptotagmin-14/16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6820 lncRNA downstream 403184 32604888 ~ 32611344 (-) True G5570
TU6804 lncRNA downstream 467522 32545377 ~ 32547006 (-) True G5555
TU6801 lncRNA downstream 484690 32527683 ~ 32529838 (-) True G5552
TU6785 lncRNA downstream 622418 32391883 ~ 32392110 (-) True G5539
TU6781 lncRNA downstream 625559 32387746 ~ 32388969 (-) True G5536
TU6922 lncRNA upstream 82577 33104725 ~ 33105215 (-) True G5645
TU6983 lncRNA upstream 544025 33566173 ~ 33567325 (-) False AMCG00004102
TU7015 lncRNA upstream 604161 33626309 ~ 33627507 (-) True G5721
TU7105 lncRNA upstream 853293 33875441 ~ 33918321 (-) True AMCG00004116
TU7119 lncRNA upstream 993289 34015437 ~ 34019511 (-) False AMCG00004120
AMCG00004095 mRNA downstream 29024 32982463 ~ 32985504 (-) True AMCG00004095
AMCG00004094 mRNA downstream 39717 32963040 ~ 32974811 (-) True AMCG00004094
AMCG00004090 mRNA downstream 342657 32663664 ~ 32671871 (-) True AMCG00004090
AMCG00004091 mRNA downstream 363827 32613096 ~ 32650701 (-) True AMCG00004091
AMCG00004076 mRNA downstream 651402 32349953 ~ 32363126 (-) True AMCG00004076
AMCG00004098 mRNA upstream 28989 33051137 ~ 33106380 (-) True AMCG00004098
AMCG00004097 mRNA upstream 100444 33122592 ~ 33132313 (-) True AMCG00004097
AMCG00004103 mRNA upstream 532262 33554410 ~ 33556854 (-) True AMCG00004103
AMCG00004102 mRNA upstream 543938 33566086 ~ 33567299 (-) True AMCG00004102
AMCG00004105 mRNA upstream 547162 33569310 ~ 33597389 (-) True AMCG00004105
TU6815 other downstream 418121 32593627 ~ 32596407 (-) True G5566
TU6786 other downstream 587965 32407802 ~ 32426563 (-) True G5540
TU6736 other downstream 704618 32309480 ~ 32309910 (-) True G5502
TU5805 other downstream 6144950 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 7112916 25897934 ~ 25901612 (-) True G4521
TU7138 other upstream 1109950 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 1869753 34891901 ~ 34892613 (-) True G5871
TU7292 other upstream 1938812 34960960 ~ 34963839 (-) False AMCG00004132
TU7345 other upstream 2332473 35354621 ~ 35414446 (-) False AMCG00004143
TU7893 other upstream 4345837 37367985 ~ 37368822 (-) True G6441

Expression Profile