RNA id: AMCG00004100


Basic Information

Item Value
RNA id AMCG00004100
length 1821
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00004100
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33241032 ~ 33247564 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAAACCCGTCTTACTGCATCCTTACAGGCATGCAACATGCAACTTTAGAGCTTACACTGCCAGCCAACTCCACTACAACTCATACTTAACGCAGACAAACAAAAGCTATCCATGAGATCACATTATTTCCAAAACTGCATGTGCTTCTTCAAAGACTTTTGCACTGAACTGCACAACTTCTTGAGCACTTCTGAGAGAGCCGCATCTTCACTGACCCCGCTGGACGCTCTCCTCTCATCGGACCTGGGAACTACCGCTGCCCGCTAAACTTAACATTTCACAGTTATTGGTGTCTACCATGGGAAGTAAAACCCTTCCAGCTCCTGTTCCCATCCATCCTGCTCTGCAAATGGCCAACTACTCCCTGCTGCAAGCTTCCAACAGTGTCCAGCTTCCCTCTGACCACATACCGAGCATCTACGGCTTCAGTGCCCTCCATGCTGTCCATCTCCACCAGTGGACCCTGGGGTACCCTCCTATGGCCTTGCCCCGCTCCACTTTCTCCAAGCTGCCTGCCCTAGTGGATGGTAGATTCCAGATACCTGCCTTTCCCATCTTCCCTCACATCATCCAGCCAAAACAAGACATCACCAACGGGCAGGCTAAAAACAAGCCCCGATTCGATTTTGCGAATCTGGCTGTAGCTGCCACCCAAGAAGATCACATGAAGGCAGAGGACCTGAGCTCCCCTCCTGCTATCAGCTCTCTGCTGGACGTCACCAAGTTGTCACCCGAGAGGAAGCCCAGTAGGGGGAGGCTCCCctcaaaaaccaaaaaagagTTTGTTTGTAAATTTTGTGGGAGGCACTTTACAAAATCGTACAATCTCTTAATTCATGAAagaacacacacagatgaaagACCGTACACCTGTGATATTTGCCATAAAGCCTTCAGGAGGCAAGATCACCTGAGAGACCACAGGTATATCCATTCCAAAGAAAAGCCTTTCAAATGTCAAGAATGTGGAAAAGGGTTTTGTCAGTCCAGGACACTGGCTGTCCACAAAACATTGCACATGCAGGTCAAGGAGCTAAAACCTTCCAAGATAAAGTGCTAGAAGGAACATCAGAGGACTTTAAAGGAGTGACAAGGGTGCACTGGGAAGAAAATGAACATGGCAAGGACCTGGCAGAATGGCCAAGAATATGTGAAGGCAACAAGGAAGcgttgttgtttttgaacacCTCAACCGCAGTTAAGccgaaaacaaaaacaaaaacaaaaatctcttgGAACTGTACCATTCTGGAAACCAAAAAGCCATCATTTTGTGATGAGACTTGTGTTTAACAGGGTTATAAATCTTGGACTTAAATTACACAGAGCCTTATTGAAAGGAATgcctttgactgaaataactttttttttctttttgttaaggCATCACTTTAAGGGCAAAAGGACTTCCTTAACCGAATCAGGTCTGTGTAATGGACTGCGTACGTAAGTGATCAACAGAATCAATCTCTGGAAAGCGATCCTGCCTCTTCGTTAGCTGTATGGATATTGAGCACCAAGATACAAAATGACTCTGGTCCTCgggtttatttttttgatataTGACTTGAAAGAAATGCTATACACAGAGCAGTTCATTCTGAATGTTGAAGCTAGGGCGGCATGAACTGATTTCTGTTATTTCAAGGGCAACATTCCATTGTTTTTCTATGTacagatttatttgttgtttttattttttatttgtatacaaaaaatgttatttttagcaCTTTACCCTGGTTATTGATAATTTACATATATCACTGGATTCCCTAaacttatttttgaaataaatagtCATTTTCTAAACGAAACA

Function

GO:

id name namespace
GO:0035775 pronephric glomerulus morphogenesis biological_process
GO:0035776 pronephric proximal tubule development biological_process
GO:0035777 pronephric distal tubule development biological_process
GO:0035778 pronephric nephron tubule epithelial cell differentiation biological_process
GO:0035779 angioblast cell differentiation biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0048382 mesendoderm development biological_process
GO:0048389 intermediate mesoderm development biological_process
GO:0033339 pectoral fin development biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09215 OSR, ODD; odd-skipped

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6819 lncRNA upstream 628981 32611833 ~ 32612051 (+) True G5569
TU6774 lncRNA upstream 838649 32400405 ~ 32402383 (+) True AMCG00004079
TU6773 lncRNA upstream 853497 32384435 ~ 32387535 (+) True G5529
TU6771 lncRNA upstream 857353 32383409 ~ 32383679 (+) True G5527
TU6760 lncRNA upstream 890929 32348390 ~ 32350103 (+) True G5522
TU6947 lncRNA downstream 190764 33438328 ~ 33445420 (+) True G5662
TU6968 lncRNA downstream 225472 33473036 ~ 33473330 (+) True G5680
TU6969 lncRNA downstream 227278 33474842 ~ 33475047 (+) True G5681
TU6976 lncRNA downstream 318609 33566173 ~ 33567479 (+) True G5688
TU6999 lncRNA downstream 350328 33597892 ~ 33600011 (+) True G5707
AMCG00004101 mRNA upstream 98494 33137636 ~ 33142538 (+) True AMCG00004101
AMCG00004099 mRNA upstream 105541 33132355 ~ 33135491 (+) True AMCG00004099
AMCG00004092 mRNA upstream 294116 32937405 ~ 32946916 (+) True AMCG00004092
AMCG00004093 mRNA upstream 340362 32876810 ~ 32900670 (+) True AMCG00004093
AMCG00004088 mRNA upstream 396382 32838964 ~ 32844650 (+) True AMCG00004088
AMCG00004108 mRNA downstream 188186 33435750 ~ 33452672 (+) True AMCG00004108
AMCG00004109 mRNA downstream 313460 33561024 ~ 33565863 (+) True AMCG00004109
AMCG00004110 mRNA downstream 500345 33747909 ~ 33761457 (+) True AMCG00004110
AMCG00004113 mRNA downstream 519482 33767046 ~ 33767636 (+) True AMCG00004113
AMCG00004115 mRNA downstream 657727 33905291 ~ 33912885 (+) True AMCG00004115
TU6919 other upstream 109846 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 2346205 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 2969508 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 5137821 28062363 ~ 28103211 (+) True G4831
TU7209 other downstream 1605299 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 2504969 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 3024628 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 3526437 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 3613983 36861547 ~ 36891746 (+) True G6328

Expression Profile