RNA id: TU6983


Basic Information

Item Value
RNA id TU6983
length 604
lncRNA type sense_over
GC content 0.44
exon number 3
gene id AMCG00004102
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33566086 ~ 33567325 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGCAATGGGTGAGGGAGAGAATGGACAGCGGCAGGCATGCGTCATACGTCATACACATGCGACTAGAGCAGGAGCGGTCGCGTTGATGAGGTTGCTGTTGCTTTTAACAACCGCGGACAGATCAAGTACCTGAGAGTGGATTTCTACGAAGCAATGGAAGATTACACGTCAGCAATCGAAACAAAGAGACAGTTCGACATTCCATATTACAACAGGGGGCTGATACGCTATAGACTAGGGTTTTATGAAGATGCAGAAAAAGACTTCAGGAAAGCACTGGAACTAAACCCTAGTTTTGAAGATGCCAAGCTCAGCTTAAAACAGACTTTAACAGACCAAGAACAAAAGATACAAAGAGGGTATTAAAGCCTAAAATTCCTTGGtcttgctaatccaagtttgtTCCACCTGAACATAATCCTATAGAACCACTACAGCCTCCCAGGAACTGATGAGTCAAGTGTCAACTTCAGTACATTACACCAGAAAGCAGAAGGGTATTTTGGAATTGAGCTCTTGCATCATTGCCAAGAACTAAGCAGGAGACCATTTAAAGGCAACTGCATATAAAGAGGCTATATTCCTGGCAATGTGAAGACGagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6922 lncRNA downstream 460958 33104725 ~ 33105215 (-) True G5645
TU6820 lncRNA downstream 954829 32604888 ~ 32611344 (-) True G5570
TU6804 lncRNA downstream 1019167 32545377 ~ 32547006 (-) True G5555
TU6801 lncRNA downstream 1036335 32527683 ~ 32529838 (-) True G5552
TU6785 lncRNA downstream 1174063 32391883 ~ 32392110 (-) True G5539
TU7015 lncRNA upstream 58984 33626309 ~ 33627507 (-) True G5721
TU7105 lncRNA upstream 308116 33875441 ~ 33918321 (-) True AMCG00004116
TU7119 lncRNA upstream 448112 34015437 ~ 34019511 (-) False AMCG00004120
TU7145 lncRNA upstream 724944 34292269 ~ 34292496 (-) True G5805
TU7222 lncRNA upstream 1305288 34872613 ~ 34897907 (-) True G5869
AMCG00004103 mRNA downstream 9319 33554410 ~ 33556854 (-) True AMCG00004103
AMCG00004097 mRNA downstream 433860 33122592 ~ 33132313 (-) True AMCG00004097
AMCG00004098 mRNA downstream 459793 33051137 ~ 33106380 (-) True AMCG00004098
AMCG00004096 mRNA downstream 544025 33014528 ~ 33022148 (-) True AMCG00004096
AMCG00004095 mRNA downstream 580669 32982463 ~ 32985504 (-) True AMCG00004095
AMCG00004105 mRNA upstream 1985 33569310 ~ 33597389 (-) True AMCG00004105
AMCG00004106 mRNA upstream 32568 33599893 ~ 33607026 (-) True AMCG00004106
AMCG00004107 mRNA upstream 44271 33611596 ~ 33624593 (-) True AMCG00004107
AMCG00004104 mRNA upstream 65649 33632974 ~ 33645712 (-) True AMCG00004104
AMCG00004112 mRNA upstream 120629 33687954 ~ 33689966 (-) True AMCG00004112
TU6815 other downstream 969766 32593627 ~ 32596407 (-) True G5566
TU6786 other downstream 1139610 32407802 ~ 32426563 (-) True G5540
TU6736 other downstream 1256263 32309480 ~ 32309910 (-) True G5502
TU5805 other downstream 6696595 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 7664561 25897934 ~ 25901612 (-) True G4521
TU7138 other upstream 564773 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 1324576 34891901 ~ 34892613 (-) True G5871
TU7292 other upstream 1393635 34960960 ~ 34963839 (-) False AMCG00004132
TU7345 other upstream 1787296 35354621 ~ 35414446 (-) False AMCG00004143
TU7893 other upstream 3800660 37367985 ~ 37368822 (-) True G6441

Expression Profile