RNA id: AMCG00004106


Basic Information

Item Value
RNA id AMCG00004106
length 1023
RNA type mRNA
GC content 0.56
exon number 5
gene id AMCG00004106
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33599893 ~ 33607026 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCCCTTCTTCGGCGGTCTAGGGTACTGCTTCGCCATCCTGGTGCTTCAGGTGCAAGGGACTAACTACAGGTTTTATGGACGTGAGCCGCAGAGGGTTTCTCCCTTGAGATTTGCGCACAGACCTGTGGCCAGACATAATTTGCGCAACATCCAAGCGGCGCAGGATACAGTCCACACCCCAGTACACGGCAATAATTACAGGTTTTATGGCTATCACTATCACCAGCCACCGAGGATATCGCCACTGCCCACCTTCCCCCGGCCCACCGCCAGACCAGAGCAGCCGGCCAGTACCCAAAGTGGCCACAACTCCATCAGTTCTGACACAGaaCAAGTGAAAGAATGCCGCCCTCTGGACCTCGTCTTCATCATTGACAGCTCTCGCAGCGTACGCCCGGCTGAGTTTGAGAAGGTCAAGATCTTTCTGTCGGACATGGTTGACACACTGGACATTGGGCAGGATGCCACCCGAGTGGCGGTGGTCAACTACGCCAGCACTGTGAAAATCGAGTTCCTCCTCAAGACCTACTTCAACAAGGTGGACATGAAGCAAGCAGTGTCGCGCATTGAGCCCCTCTCTACTGGCACGATGACTGGCCTGGCCATCAAGAATGCTATGGAAGATGTCTTCAACGAGCGAGCCGGGGCCCGGGGCCGCTCCCTGAACATCCCCAGGGTGGCTATCATCGTGACAGATGGGCGACCCCAGGACAAAGTGGAGGAGGTGTCCATCCAGGCCCGAGGAGCCAGGATTGAGATCTACGCAGTGGGGGTGGACAGGGCTGACATGCAGTCCCTCCGGTTGATGGCGACCCCCACACTGGACGACCATGTCTTCTATGTGGAGACCTATGGAGTCATTGAGAAGCTCACCTCTAAATTCCGCAAGACCCTGTGTGAGGAAGTGAGGGCAAGGGTGACAGTGGACCCATGCAAGTGTGAGGCCCAgcttgcatttcagaaaaccGTGCAGTCCTCCATTCAGTCCCTGGCAAGCAGACATATCCTTTTACTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6983 lncRNA downstream 32568 33566173 ~ 33567325 (-) False AMCG00004102
TU6922 lncRNA downstream 494678 33104725 ~ 33105215 (-) True G5645
TU6820 lncRNA downstream 988549 32604888 ~ 32611344 (-) True G5570
TU6804 lncRNA downstream 1052887 32545377 ~ 32547006 (-) True G5555
TU6801 lncRNA downstream 1070055 32527683 ~ 32529838 (-) True G5552
TU7015 lncRNA upstream 19283 33626309 ~ 33627507 (-) True G5721
TU7105 lncRNA upstream 268415 33875441 ~ 33918321 (-) True AMCG00004116
TU7119 lncRNA upstream 408411 34015437 ~ 34019511 (-) False AMCG00004120
TU7145 lncRNA upstream 685243 34292269 ~ 34292496 (-) True G5805
TU7222 lncRNA upstream 1265587 34872613 ~ 34897907 (-) True G5869
AMCG00004105 mRNA downstream 2504 33569310 ~ 33597389 (-) True AMCG00004105
AMCG00004102 mRNA downstream 32594 33566086 ~ 33567299 (-) True AMCG00004102
AMCG00004103 mRNA downstream 43039 33554410 ~ 33556854 (-) True AMCG00004103
AMCG00004097 mRNA downstream 467580 33122592 ~ 33132313 (-) True AMCG00004097
AMCG00004098 mRNA downstream 493513 33051137 ~ 33106380 (-) True AMCG00004098
AMCG00004107 mRNA upstream 4570 33611596 ~ 33624593 (-) True AMCG00004107
AMCG00004104 mRNA upstream 25948 33632974 ~ 33645712 (-) True AMCG00004104
AMCG00004112 mRNA upstream 80928 33687954 ~ 33689966 (-) True AMCG00004112
AMCG00004111 mRNA upstream 105631 33712657 ~ 33732193 (-) True AMCG00004111
AMCG00004114 mRNA upstream 168263 33775289 ~ 33776197 (-) True AMCG00004114
TU6815 other downstream 1003486 32593627 ~ 32596407 (-) True G5566
TU6786 other downstream 1173330 32407802 ~ 32426563 (-) True G5540
TU6736 other downstream 1289983 32309480 ~ 32309910 (-) True G5502
TU5805 other downstream 6730315 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 7698281 25897934 ~ 25901612 (-) True G4521
TU7138 other upstream 525072 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 1284875 34891901 ~ 34892613 (-) True G5871
TU7292 other upstream 1353934 34960960 ~ 34963839 (-) False AMCG00004132
TU7345 other upstream 1747595 35354621 ~ 35414446 (-) False AMCG00004143
TU7893 other upstream 3760959 37367985 ~ 37368822 (-) True G6441

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036121 False 1974 mRNA 0.39 5 NC_007131.7 43760059 ~ 43775517 (-)