RNA id: AMCG00004110


Basic Information

Item Value
RNA id AMCG00004110
length 1979
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00004110
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33747909 ~ 33761457 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGTCCTCTCCTGATGCCAAATACTGCTGTTACTTTCATATTCTCTGTTTTCTTAACAGAAGACAGGAACTCCTGAGTGGAGAAACGGGAGAAACTCAAGGAGTGAAAAGTCTGCCTCTGCAGAGACTCATGACAAGATGGAAAATCTCAGTCTGAAACGAGACCTGGGACTGCTCAATGCAGTATCCTTGATAGCTGGTACTATGATTGGTTCTGGGATCTTCATGAGCCCTCAGTGGGTTCTATACCACATTGGGAGCCCGGGAGCAAGCCTGCTGATCTGGGGAGCCTGTGGTGTCCTGGCTATGTTGGGTGCACTATGTTATGCGGAACTGGGGACAGTGATCACAGAGTCTGGTGGGGATTATATCTACATCTTACGGACCTCAGGACCACTTCTTGCCTTTCTCCTATCTTTCACTTCCATGATGGTGGTAAGACCAGCCAGCTATGCAGGTTTGGCCCTGAGTTTTGCAGAATATGCTGTGGCTCCTTTTTATCAGGGGTGCACCGCACCCCAGCTAATAGTAAAAATCGTGGCTGCTGTTTGTATTCTTGTGCTGGCAATCGTAAACACCCTCAGTGTGAGGTTTTCCATGTCTATTCAGATCTTCTTTTTGGTAGCCAAGGTGCTAGCACTGTTGGTGATAGTGATCGGAGGGGTAGTGATACTGTTCCTTGGAGGACACAGTGACAGCTTTCAGGATGCATTTCAAGACACAAAAGTGGGAATAAATCCAGTAGGAGCAGCTTTTTTTCAAGCTCTGTGGTCCTTCGAGGGGTGGAACAATCTGAATTATGTGACAGAAGAACTGAAAAGGCCTGAGGTTAATCTACATAGAGCATTGATAATTGCCATCCCCATGGTAACAGTGCTTTACCTTCTGGTGAATGTCAGCTACCTGGCAGTCATGACCCCGAGAGAACTGATGACATCAACTGCTGTGGCTGTCACATGGGGGAACAAAGTGCTAGGTAGCTGGGGTTGGCTGATGTCAGTGGCAGCGGCGATGTCTGCCTTCGGGTCTCTGAATGGGTCTTACTTTAGTGGGGGCCGCATGTGCTTTGTGGCAGCAAGGGAAGGCCACCTGCCAGAAATCCTGTCCATGGCGCATGTGCACCGTCTGACTCCTTCGCCTGCTCTCATCATCAACACAGCTATGGCTTTACTGGTGCTGATTCCTGGGGACTTTAACACTGTTATCAGCTTTTTCAGCTTCACTGTATGGGTCTTCTATGGGATAATATTCTCCAGCCTCCTTTACCTGAGGATTAAGAAACCGCACCTTCACAGACCTTACAAGGTCCCTATTGTCTTCCCGATCATCATGTTAATAGCTGCAGTGTTTCTGGTGCTTTCTCCAATCGTCGACAACCCTCAGATAGAATACCTGTATGTGATCCTCTTCATTGTCAGTGGGACTTTTATCTACATCCCTTTTGTACACTTCAAACTTTGCCCAGGGTTACTGACTAAAGCTACTTTGTTTTTACAGCTCCTTTTTGAGGTTGCTCCAGTtgacaaaaatgtgtaaatatccTATAGTCTGATgacacaaattacacacaggATTCATGACGATCACCCATTTTGCATCTTATCCTGTCCATAAAATATGACTGTAACAGTTGCTGTTAAATGGTGCTATGCAGCTCTGGGGTGGTAGGGGAGGCTGGGATGTAAAAAGATCCTCAAAACATTAGAGAGAAAGGAGTATCCATATATGgggcaaaattaaaacaacctATGACTTTATCCTGAGAGTTGTTTCTTTTGGCAATTTCTACCTCCAATCATggaggtatatatatatatatatatatatatatataacattttactgTATACCAAAGAAAAAGTGAACCTTAAGCAAGATAATCTTACATTTGTATAGACAAGAATTAAATccttaatgtttaatttcaaagtttcgtagtttatatatatatatatatatatatacatacactcacctaa

Function

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13868 SLC7A9_15, BAT1; solute carrier family 7 (L-type amino acid transporter), member 9/15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7014 lncRNA upstream 120402 33626367 ~ 33627507 (+) True G5720
TU6999 lncRNA upstream 147898 33597892 ~ 33600011 (+) True G5707
TU6976 lncRNA upstream 180430 33566173 ~ 33567479 (+) True G5688
TU6969 lncRNA upstream 272862 33474842 ~ 33475047 (+) True G5681
TU6968 lncRNA upstream 274579 33473036 ~ 33473330 (+) True G5680
TU7059 lncRNA downstream 8132 33769589 ~ 33771848 (+) True G5750
TU7098 lncRNA downstream 131017 33892474 ~ 33893143 (+) True G5768
TU7121 lncRNA downstream 316894 34078351 ~ 34080785 (+) True G5787
TU7123 lncRNA downstream 320369 34081826 ~ 34090122 (+) True G5788
TU7144 lncRNA downstream 530814 34292271 ~ 34292501 (+) True G5804
AMCG00004109 mRNA upstream 182046 33561024 ~ 33565863 (+) True AMCG00004109
AMCG00004108 mRNA upstream 295237 33435750 ~ 33452672 (+) True AMCG00004108
AMCG00004100 mRNA upstream 500345 33241032 ~ 33247564 (+) True AMCG00004100
AMCG00004101 mRNA upstream 605371 33137636 ~ 33142538 (+) True AMCG00004101
AMCG00004099 mRNA upstream 612418 33132355 ~ 33135491 (+) True AMCG00004099
AMCG00004113 mRNA downstream 5589 33767046 ~ 33767636 (+) True AMCG00004113
AMCG00004115 mRNA downstream 143834 33905291 ~ 33912885 (+) True AMCG00004115
AMCG00004121 mRNA downstream 358114 34119571 ~ 34130023 (+) True AMCG00004121
AMCG00004122 mRNA downstream 369669 34131126 ~ 34133612 (+) True AMCG00004122
AMCG00004125 mRNA downstream 869764 34631221 ~ 34638669 (+) True AMCG00004125
TU6919 other upstream 616723 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 2853082 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 3476385 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 5644698 28062363 ~ 28103211 (+) True G4831
TU7209 other downstream 1091406 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 1991076 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 2510735 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 3012544 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 3100090 36861547 ~ 36891746 (+) True G6328

Expression Profile