RNA id: AMCG00004114


Basic Information

Item Value
RNA id AMCG00004114
length 246
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00004114
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33775289 ~ 33776197 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGTGCCCTTCACTGGTGCCAGTATGAATCCTGCCAGGACACTGGGGCCCAGCCTGCTGTGCGGTGAATTGGAACATCACTGGGTGTACTGGGTGGGACCTGCTATTGGCGCAGTGATTGCATGGTTCCTGTATGACTTCCTGTTGTGTCCCGATTTCAAGTTCAACAGGTGGCTCAATGCGCACCCACCCCAGATGGAGAAGCCGGGGAAAATGAGCAGATTGAATGCAGTATTACAGTAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006833 water transport biological_process
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7015 lncRNA downstream 147782 33626309 ~ 33627507 (-) True G5721
TU6983 lncRNA downstream 207964 33566173 ~ 33567325 (-) False AMCG00004102
TU6922 lncRNA downstream 670074 33104725 ~ 33105215 (-) True G5645
TU6820 lncRNA downstream 1163945 32604888 ~ 32611344 (-) True G5570
TU6804 lncRNA downstream 1228283 32545377 ~ 32547006 (-) True G5555
TU7105 lncRNA upstream 99244 33875441 ~ 33918321 (-) True AMCG00004116
TU7119 lncRNA upstream 239240 34015437 ~ 34019511 (-) False AMCG00004120
TU7145 lncRNA upstream 516072 34292269 ~ 34292496 (-) True G5805
TU7222 lncRNA upstream 1096416 34872613 ~ 34897907 (-) True G5869
TU7223 lncRNA upstream 1101303 34877500 ~ 34878219 (-) True G5870
AMCG00004111 mRNA downstream 43096 33712657 ~ 33732193 (-) True AMCG00004111
AMCG00004112 mRNA downstream 85323 33687954 ~ 33689966 (-) True AMCG00004112
AMCG00004104 mRNA downstream 129577 33632974 ~ 33645712 (-) True AMCG00004104
AMCG00004107 mRNA downstream 150696 33611596 ~ 33624593 (-) True AMCG00004107
AMCG00004106 mRNA downstream 168263 33599893 ~ 33607026 (-) True AMCG00004106
AMCG00004116 mRNA upstream 100332 33876529 ~ 33880936 (-) False AMCG00004116
AMCG00004117 mRNA upstream 119849 33896046 ~ 33899005 (-) True AMCG00004117
AMCG00004118 mRNA upstream 152317 33928514 ~ 33939125 (-) True AMCG00004118
AMCG00004119 mRNA upstream 173770 33949967 ~ 33968657 (-) True AMCG00004119
AMCG00004120 mRNA upstream 239171 34015368 ~ 34031547 (-) True AMCG00004120
TU6815 other downstream 1178882 32593627 ~ 32596407 (-) True G5566
TU6786 other downstream 1348726 32407802 ~ 32426563 (-) True G5540
TU6736 other downstream 1465379 32309480 ~ 32309910 (-) True G5502
TU5805 other downstream 6905711 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 7873677 25897934 ~ 25901612 (-) True G4521
TU7138 other upstream 355901 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 1115704 34891901 ~ 34892613 (-) True G5871
TU7292 other upstream 1184763 34960960 ~ 34963839 (-) False AMCG00004132
TU7345 other upstream 1578424 35354621 ~ 35414446 (-) False AMCG00004143
TU7893 other upstream 3591788 37367985 ~ 37368822 (-) True G6441

Expression Profile