RNA id: AMCG00004115


Basic Information

Item Value
RNA id AMCG00004115
length 3719
RNA type mRNA
GC content 0.39
exon number 2
gene id AMCG00004115
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33905291 ~ 33912885 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAGCCGCTCCGTGTCAGTCAGATCCGTGATATTAACACAATCTAAAGAGCAAAGGGGAGTTTCCAAAGTCATCAAACCCCTCCAACTTTCTCATTCTCGGCCAGAGACCACTGAAAATGGATCTTATGAGGGCTGCGGCTCCTTTCCTCTGGTTTTCCCTGTGCTTTGGGAATTTGCTTGAAGCTGCAGTGCTTGGATCACTGCGGTACCCCTCCAGTGCTGGTGGTTCACATCTGGATGAGGGACACCAAGGAGACTGGAGAGTGACCTCCAGAAACGAGCCTCTGAGGAATGAGACTGTGGTCCCCCATGAGTACATGATCTCTCTCTACAGGACCCTGTCCGAGATGGAAAGAAGGGGCTTCAACACCAGCCTTTCTCGCAGCAGAAAGCATGCCAACACGGTGACCAGCTTTGTAGACCAAGGCAAAGATCACCCTACGACTGATCCACGCCAGCGCTATTTGTTTGACCTCTCCAGTTTATCCAAGTCAGATGAGTTAGTGGGAGCAGAGCTGCGGATTTTGAGGAAGCCTCCCCAGAACCTGCCACTGTCTTTATCACAAGGTGGTAACCTTTACCATATCTTATTATATACCTGCCAGGAAGGAAATCTGGGGAAGCAGCTCCTGGATTCTAGGACTATGGACATTCTGGATATAGAGTCAGCCAAGTGGGACGTATTTGATGTTTGGGACATCATGAAGACCCAGAAACGAACCCACAAGGCAGGGCACCTCTTGTGCTTTGACCTGGTGGTTGTCTCTGAAGCATCTAAAGAAGCGGTCCACCCACAGTCGTTGGGGCTGAGCCGCCACTCGCGGAAGCCACAGGAGAAGGCTCTTCTGGTGGCGTTTTCTCATaccaggaagaaagaaaacttcTTTAAGGAGATCAGAGATAAGATTAAATCCATGGGAGGGCTGGGTTTCCTGGATTCCCCAGACCTCAGTCAGGGCAGTTACCCCAAGCGGCGGAGGAGACGGAGAACTGCCATGTCCAGTCGGCAGGGTGGAGGTGGAGGCGGAGGGAAGGGTAGTGGGAGGAGAAGAACGCGGTGCAGCCGGAAACCTCTCCACGTGAACTTCAAAGAGCTCGGCTGGGATGACTGGATTATAGCTCCTTTGGATTATGAGGCCTATCACTGCGAAGGAATCTGTGACTTTCCCCTGAGGTCTCACCTAGAACCCACAAACCACGCCATCATCCAGACTTTAATGAACTCCATGGATCCAGACTCCACTCCGCCCAGCTGCTGTGTCCCTTCCAAACTCAGTCCTATCAGCATTTTGTACATAGACTCGGGCAACAACGTGGTTTACAAGCAGTACGAAGACATGGTAGTGGAGTCCTGTGGATGCAGGTAGCAGTTTGGACATCCCCTTACTTGAACAGAAACAGCACTTCTTCATGGCTCTTCATCTTGTGTGCTGATGCTTGAGCGCTGTTTTGTgcgtgcgtgtttgtgtgtgtgtgtttttgtgtgtgcaagtgtgtgtgtgcttgtgtgtttgggATTTATATTGAGAGAGTATACATTGAAAGTGTTGACACCCTTGCTTTATTGTACTTTGAGCTGAGCAGAATCCTTTGGtttaaatataacatattttgaTACAACTGAAAATCTTTACTAACAATAGATTTTCATTAGGACAGCATCACATTAAATCAGTTGGCTCTTTCTAGGGGTGGAAATTATCCTCTTTCTGTCACTTTGTTTTGTGCTCAGTAATGTAATCACTTTCTTGCTTATAGAATCAAGAACGATTGTGTTAAAAGCACAAATCAGACTTACTCACTGAAAGACTTCTCTGAAACAATGTCTTATTACAGTGAcctcaacacattttaattcaattcaaatagTATTCAATTTCAGGTTCATCAGAGAGTATTTGCACAGAAGAATGCCAGTCAgtttaacattgatttattttaatatacttaaaatatatataccatttatggaaatgttttaatgcttCAGGCGTCTTTTGGTCTATCTGTGCACAGAacatcttaaaaagaaaaaaaaaaagctgtgggGTTGACTGTGGATGCTCAGAATACAGATCTGACCTCTCCTTATAAGAGATCAAATGAACACATGCAGTTATGGAAAGTCAGTCACCTAAACAGTAGTGTGTTTATAAAGTATTTAGCTGCAGTATTCATTTCCACATTTCTAACTGTGCAAAACATAGACCATTCAAAACCATGTACAGTGGCTAACAGGATCTGGTTCAATAGGATTTGTTAACAGTTATTAAACAGTTATTAAACTTGGGCATTAGATTCAGagtatatttttgttataagGCCAGGGTTTGTATAACAATTTGAATTTGTCTTCATCCTTACtgagtttgtttacattgtttagGTGGCAGAAAATCCTATTTcctattgtgtttaatttattagtaAATGTCATTACACTTAGAGTCATTAGAGTCATATGCTGTTCATTATTGCTATAACATTGTGTGACTGTGTAGAATCATTTGTAATAACACACATGACAAGCATGTAACTATTCATAACTTGCTGTAAAATGTGCCAACCCatgtttataaaatacaaaatatttaatttgtttgacaGATATCAATCAATGCAGTGAACTGCCGACGACTGTGTATTACTTTAAGTGcacttatatattttattttgaaacaaaatagcTCAGAATTTCAACAACTGTTACAACAGCTTGGTATAATACTGACAAGGATAGTATGCTTGTTTACCAGGGAACAAATAAAGATACAGTTTGTTACCAGACTTTGAAAGCTGTGCCCTATCTGGGCAAAATTATACACCCACACAGGAACTCTTGTAAAGATTTCAATCTGAAGAGTTGCTTTTGGGTCTGTTTAAACATTACTAAACTTTGTTGCTTTCTATATGATTCCTTTAATAATCAATGGGTGATGTAATAAGTTATTTGCCCTCTAATAGGATTCTCTATTATATTAGCCAAAATTAAATGTCTCAGCCCAAATGTTAAATTGCCTTATCGGGTAGAATATTAAGGCTCCCATAAATTAGATACAATTCCAAATTTTACATTTGGGAAGGTGTTAACTAGAGCTTACTTCAGCATGctctctttgtttctttgtttctataCACAAATAAGAACAAAGGAGCTAAAGCTATAAAGCTATCACATATAATCTAACAGCACTGGATTGTGATGAAATAATTAATCACAGTGAAGGCTTTGATCAGAGTCTGATAATAATTGTCATCTTTATTGTATCATCATATAGGACTtggtaatgtttgttttttcttctttaaaaacaacaatattcacAATTTCTGATAAcgttaaattaacttttaaacaTACCTGTATGTACTCATCTACATCAACTGCATATAGTTTATgtgctattatttattaaatgtactgttcaCAACATGATCTTCTAAGATTGACAGTTTCTAAGTTAATAAGCTGTTGAAAGCAGCTATGCTGACATTTTCAACTAAATAATTGATTAGTAAAGCCTGTACccaaatactattttaaattagCGTTAATCAACTAAGACATAGTTTTAGTAACAGTTTATGTGTACAATAACTCTAGGCTATGCTTTCTATGTAGCCTttacagaaatcaaaaacagctcattcatttattcatttaagcCAATTACTCTCTTTCATTTCCACATTAtatcttcatgtttttttttctgtg

Function

GO: NA

KEGG:

id description
K04662 BMP4; bone morphogenetic protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7098 lncRNA upstream 12148 33892474 ~ 33893143 (+) True G5768
TU7059 lncRNA upstream 133443 33769589 ~ 33771848 (+) True G5750
TU7032 lncRNA upstream 136477 33685727 ~ 33768814 (+) True G5731
TU7014 lncRNA upstream 277784 33626367 ~ 33627507 (+) True G5720
TU6999 lncRNA upstream 305280 33597892 ~ 33600011 (+) True G5707
TU7121 lncRNA downstream 165466 34078351 ~ 34080785 (+) True G5787
TU7123 lncRNA downstream 168941 34081826 ~ 34090122 (+) True G5788
TU7144 lncRNA downstream 379386 34292271 ~ 34292501 (+) True G5804
TU7148 lncRNA downstream 468983 34381868 ~ 34382099 (+) True G5808
TU7220 lncRNA downstream 981217 34894102 ~ 34895661 (+) True G5867
AMCG00004113 mRNA upstream 137655 33767046 ~ 33767636 (+) True AMCG00004113
AMCG00004110 mRNA upstream 143834 33747909 ~ 33761457 (+) True AMCG00004110
AMCG00004109 mRNA upstream 339428 33561024 ~ 33565863 (+) True AMCG00004109
AMCG00004108 mRNA upstream 452619 33435750 ~ 33452672 (+) True AMCG00004108
AMCG00004100 mRNA upstream 657727 33241032 ~ 33247564 (+) True AMCG00004100
AMCG00004121 mRNA downstream 206686 34119571 ~ 34130023 (+) True AMCG00004121
AMCG00004122 mRNA downstream 218241 34131126 ~ 34133612 (+) True AMCG00004122
AMCG00004125 mRNA downstream 718336 34631221 ~ 34638669 (+) True AMCG00004125
AMCG00004124 mRNA downstream 753507 34666392 ~ 34685790 (+) True AMCG00004124
AMCG00004126 mRNA downstream 782518 34695403 ~ 34724610 (+) True AMCG00004126
TU6919 other upstream 774105 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 3010464 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 3633767 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 5802080 28062363 ~ 28103211 (+) True G4831
TU7209 other downstream 939978 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 1839648 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 2359307 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 2861116 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 2948662 36861547 ~ 36891746 (+) True G6328

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000189_03097932_03102218.mRNA True 2116 mRNA 0.48 2 CI01000189 3097682 ~ 3102815 (-)