RNA id: AMCG00004121


Basic Information

Item Value
RNA id AMCG00004121
length 6948
RNA type mRNA
GC content 0.40
exon number 4
gene id AMCG00004121
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34119571 ~ 34130023 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGTGATTGACTGATTTTCTATACTGCATCATTGCGGCTTCAGTTCGTTGTGTTGAGCTGGCTGGTGTGTTGTCCTGCGCTGAGATGCTTCAGTGTCGGCTCATCTCTGTCATCAAGCGTCTCTCTGCGCCGTCCGCGGGCGGAAATGACGTCGCTGGACGATGTTGCGCGTGGACGCCGAACGCGCACGACGCGCACGTGAAGATGGATCGTCCCACGAggcCACAGATGGATGCAAAGCTTCCTGTGCCATATGCTTTATGGCCTGTGGACCTAAAGCTCAAACACGTGGACTGCAATCCTGGAGATACCCTGGTACATTTCCAGGGTCAATATCTGACCATATGTGAGCTGGACTACAATATACTGCaagtagaaatacaaaacacagagaaaactACAGGGACTGTGGAGCTGGGGGGGTTCTGCTTAGTAGAAGACACTTTCTTTGGTCAGTGGTATAGAGGAAGAGTGCAGAAGAAACACAGTGATTTATATGACGTTTTTCTCATTGATCACGGAAATGTTTTGACCGTTGATAGTAGCCATCTGGCTTCTGCTTGTGACAAGTTGTTTATGCTTCCCCCCAAAATTACCTGTGGCTTTTTTGCCAATATGCTCCCTGTGGGAGAAAAGTGGGATGTCTTGACAGTAAAGTTTTTCTCATCTTTAATAGGATCTGAGATCACAGGCTATATCCAAGCTGTCTTGCCACACAAAGTGCTAGTATTGGAAGCTCCTGATATTAACACAGATCTCACCAGACTGGGATTTGGGAAGGGAGTAGATAAGGACACATTCCTTCTACTTGTGGAAATGTTGACAGAGGTACCtcttaaacaaaacagtgaACCTGTTCCGGACTTGTTAATTGAAAAGCAAGTAGGACAGGAATTCACTTCTAAACCTTCAAgctttcagtgttttcagaatATATTGTCATATTGTGGTCCCAAACTGTCTGTTGGGAGAATAGAAAGAGCTAAAATAACTGCAGCAGTAAACCCCAGTACATTTTACTGTCAGTTAATGAGCATGGAACAGGATCTTAAGGAAATGACTGAAACTCTGTCACAATTGTGCGATTCTCAATGCAAAGAACTTCGTGAGAAACATGCTGGTAACATGGGGGTACTGTGTTCTGTTAAAGGGAAAGATGAAAAGTGGCACAGAGGTTTTGTGCAACAGGTTGTTCCTGATGGTCAAGCAAGAGTATTGTTTGTTGATTATGGTTTTTGTGACTCTGTTAAAGTAGAGAACATTCTTCCACTAACTTCAGATTTTCTAGGACCATCAATTATGGCTTTCCCTTGCGCATTGTCTTGTCAAAGTGACCAGGACAAAATGGCACAAAAATTGCAATTAGGTGAATTTAAGAGAGGATTGTTAGGTGCCACTTTGGACATTCATATAGACCATTTTAGCACACAAGAGAATCTTTATTTTGTCACACTGTTTAGTACTACAGAAAAAGCAGACCTGGGCTTTCAGGAAATGgtcagaaaatgtgaaaaatccaCTCAAGAAGAAAATGGCGTTTGGGAAGTGGAAAATGAcactgaaaatggaaatgttttacaatgtaaCCGAAGTAAAGAAAATCCGAAAGATGCTACCCACATTAAAGAAATGAAGAAGTCTTCCTATGTAGGTTTTGTAGAGCATGTTGTAAACCCATCTGATTTCTGGATGAGAACAGAAGAACGTAACAATGCGTTTGAAGATATGATGGACAAACTTACAAACTATTGCAACAGCATGGAGCTAAATGAAGGCACAATGAACTATCCTGAACCTGATTCTCTTTGCTGTGCTATGTATGAAAAGGATATGCATTATTATAGAGCTGTCATAAcagatgtatttgaaaatgggGCAGAAGTGTTTTTCATGGACTTTGGAAACACAGAGAAGGTTCCATACATGTGCATTAAAGCTCTGCCGTTGAGGTTTACAGAGGAGCCTGCGTTTGCTCTTCATTGTTCTCTTGCTAATGTGAGTTCCATGGAAGATGTATGGACCGCCAATTCAACAGATTTTTTCAAGAATATAGTCTTACATAAAGctctcttggcacagattctccACAAAAATAACGATAAATACATTGTTGAATTATATGAGAAAAGAGAACCAAATAACATTAGTATTGTCTCACTTATGGTCACGGCTAAGATGGCACAGTACTGGAGCTACGTGCCCAGATACAATGACCAAATCTTAGCCAGAGAGTACCGTGCCCAACAGTCAAAAAGGAGGGTCCCCACAAGTGGTCCAGTTGTGAAGAAATTACACACCCCTCCCAATCTTAGAAACGCCAAACATCAGAAAGAAATTCGAGAGACTCAAAATAGAGTGCATACAGAAGAACCTGCAGGATGTGCAAGAACAGATACCCCATCCAAAGAACTTAAAAGTACTACAGCCTCAACGTTCAAGCCAGTGATCCTCAAGGTAGGAAGTATATTGAAAGTGCGATGcccttctgttttttctccatTCGAGTTCTGGTGCCAGCTGCAGAACAAATCCTGTGACCTGAATGATTTGCTGAAAAAGCTTCAAGATTATTATGAAACACATAAAGATCCATTCCAGCCAAATGACGGGGCCTGTGTTGTCAAGTTCTCAAAAGATGGCAAGTGGTACAGAGGAAGCATTTGCAGAAAAGTTGGTAGTGTAgtcagtgtttttcttgttgaCTTTGGCTTTACAGTGACAGAGAGGGTGCAAAATGTTCAAGCGATACAACCAGAATTCCTTGACCTTGAGGCACAAGCATTTAAGTGTAGTctttacaatttaattgaacCTACTGGTGAGTGGACAAATGAGACAAACAGACTGCTGACAGACTTTATGCGAGATGATTTCCCAGAGCTCAAGTGCATTGTATATGCGGTACTGTATGTAGAGGGTAAAGGATTGTACAATGTTGTAGATTTGCAGACACCATTTGTCAGTGCTTCACAGTTGCTAATAGAGAGAGGTCATGCCAGAAAATGTGGAAACACAAAGCCACTCATTTCATCTTATCGTCCATATTCTTATGTTCATTCTTTGTTTAACATGAAAATTGGAGGTGAAGAGCTTGTCTATGTCACACATGTGTGCAGTCCGTGGGAGTTCTATTTTCAGTTGGACAGAAACACTGAAGTTCTTGAAAGTCTGATGGAAAAAATCACAAGaacaaaaagtgaaatgcaagGCCATGTCTGGGATGTTGGCCAAGCAAAGCTTTGCTTGGCAAAATATGTTGATGGCATGTGGTACAGGGGGTTGTCTTTTGCAGTTCAATCACATTTGCATCTCAATATCTTTTTTGTAGATTTTGGAAACATGCATGTTGTTGACAAAAGCAATGTTCTACCCATTCCTGCAGAGGCTActgatttacagtttttgcCTATGCAGGCTGTGCGGTGCAGTCTTGCAGACATCCCAAAAGGAGAAATACTTGCAGAAGTAATCACATGGCTGAAGCAACATATAGTGAATAAACCTCTGAAAGCTGTAATTACATCCAGAGATGATGAAGGTGCAGTTATTTGTGACCTGTATGATGGAGATCTACAAATAAATCAGAAAGTTAAAGAACTGATTGCTTCACATGGACCTAAGGCTAAACTTGCTCTTGATGAAAAGCCTGTTGCACAGGATGGAGAATCAAGTCTGGGAATCAAAGAACCAAATATGAAAAGTGAAGCAAAAATGATCAGTCGTGTGAAACCTGCTGGCCGCAGTccaaacaaaactgattttaagAGTGAGAAGTCCTTAAATAAGGATACAGAACTTGTAGATGACTCCAAGATCGCGAAACCTAAAGAGATGTCTGTCCATGAGTTGAGAGGAGAAGAAAGGGAGGGATCATTGAGGAAAACTAACAAACCTGCAAAAGCACACAATCATCGGAGTAGGAGACATAGACCTTCAGGTTTGAGAGAACACAAGAAGTTGTTGCCAAAACTTTCTGATCTCCCTCAAAGTAAAATAAGGCCTGGCTTCAGTGTTACAGGATTTGTTTCACATATAAACACTGCTTTCAACTTCTACATACAGTTTGAGGAGGATGAGCAACCTATTCTAAAAATGGCAGAGGAACTAAATGAAGTTAAGTTGAAAGAAAACCGGAATAATTTAATCCATGAAGGGGTTAATACAGATGACCTTGTTGCAGTGAAATATGAAGAAGATGGTTCTTTCTATCGTGCAGTTGTAAAGAAATGCACTAGCAGTGATCTGCTCGTGGAGTTCATTGATTATGGCAATGTAGCAACAGTAGAAAAGACAAGTATGCGCAGACTCTCCAAAACAGGTGTTTCCCAGCCCAGGCTAAGTGTTCCCTGTTTTCTAGAAGAGCCTCACACCTTTTGCGATGATGACCATTTCAGAGAGGAAGTAACTGACAAACGACTTTCAGTTCAATTTGTTAAACAGGTTGGATCACAGTGGGCAGTACTAATGGAGGTTATTGATGAAGCCCAAGCAGGTGTTTCATCCAGTGTAATCCATAGCTGTAGTGTGGACGGTACTGAAGGGGAAGTCTCTACAGATGCTCAGAGACTTGAATGTCAGTCTCAGGATGAAAAAGATGTGACAAATCATAACACTAATACAGAAACCCATGACTCCAAACCAGGTTACAAAAATCTGCAGGATTGCAAAAGTAATCAAACTGAATGGGTGCCGCAGAATGTAAAAGTTCAAGTGCAAGATCTTAAGCCTGGGCAGATGGAGAAAGGAACGGTCTTATCTATTTCATGCAATGGAGATCTCTACATCAGTCTGCTCAAAAACTCAGAACAGCTTAATGTTCTTGGTCTTACCATTGTAGAAAATGCATACAATGCATCTTCTCTGCCAGTTATGGACCTAAAGGAAGGACTTGAATGCCTGGCACAGTCTAAGAAACATAACAAGTGGTACAGAGCAGATGTCCAAAATGTGTGTATTGACAAGGACgaagtttgtgttttcttttttgatcACGGTACCACAGAAATTATTTCTGTCCACAGCATTAAAGAGCTCACTTATGATCTTCAGTCTTTTCCCAGGCAAGCTGTTTCATGCAAGTGGACTGGCCTTGAAACTTTTTCCAGCACTACCTGTGAATCTTTCAGGGAAGCTATGAAGCCTTTAATGGATCAGGAAATTAaacttgtgtttgtttcacctTCTGAAATTGCTCCATTTTGGATGGTGGATATTACGATTGATGGGGTTTCTCTTATCCAGAAGCTCAACAAAGCAGCTTTTGTTGACAAAGTTATGGTGGAAAGATCATTTCCCCAACTTGACACTGCTTTCAAAGATGATTACTCAGTGAATGATCTCAGTCTTGTTCAGAGAATCTTCTTGCTTCCCATCGCGATGGATAGACCATACTGCAGCTTTGTTGCAGCTGTCACTGATCCTGGTGAATTCTACATTATGCTAGAAGATTTGTTTCTTGTCATGAATGATGTTTCTACAATACTTGAGAGCCTTCCAGAAGATTTGGCTGCATTGCCAAAAGCACTGTTAACTCCTGGCTCATGTTGCTTAGTCATGTCTGAAACAAAGAAGAAATGGTGCAGAGGAGAGATTATTGATGTTGACAGTGAATCAGTTTTGATCATACTAGTTGATTATGGCCATTATGAATATGTACCTTTGACACACATGAGCCATCTGAAAAGTCTTCCAGAACAGCTTACAATACTACCAAAACTTACCTATCCCTGTGTGCTTAGGGGAGTTAAGCCAGCCAAAGGAGAACAGTGGACAGATGAAGCTGCTATATTTTTCCAAGAATGCATCTCTCAGAGAAATCTGTTGATCTATTTTAGACAGTATGTGTTTGATTCCTTTTGGGAAGTGGACATTTTGGCAAATGATGTGAACATTGCTAAGGATTTAGTGGATTCCGGACATGCTGTTTATGTCGACTGTATGCTTGGACTCGGGTTACAGCAAGAGAAAAGTCTCGTCTCTTTTCTGGATACTTCGCTCAGTGCAGCTGGAATAGTACCTGAGAATgccatgaagaaaacaaacatgagtCAAGGCACTAATAGCAGCCGATTTCCTAAACTAGTGGACCACAGTATGACTGATGTGTGCAGATGTAGACAGTTTGTAAAAGAATAAAGGGTGTAGACTCTTGAAAAACAAGAAGTACAAGAAGATTTGTATGCACCTGAAAGTGTAATCCTGCTACTTATGTTTCAGCTGTTCTACCTTTGCATAAGAATTTTGTAGTGTAGATTAAATGTCCTGCGCACATTCGCTATTTATAACACAATCAgtgttttagaaataaaaaggaCCACGGATGACCCAAACTTTACACCCAAGATctcaaaatcacaaaatgtcTTTATTGGCATTAAAATGACGTTTCATGTTTGCTTTGTTGCATTTTGGAGttacatatttaaagaataaaaaatgtggaAGTAGTGGCTGCTGTGGAGACGGACTTTGAAAACAAGTCTTTGAACACTGTGTGACAATAACTGACTCATTTAAGAATATCATAGTTAGAAAGAATATTATTAGGAGCCCTTTAACAAGAATTGATTGCCATCAATTTCAACTATGGGGCATCTATCAAACTAccacattttgtacatttatatttgtacttatttgttaattcacaatttaaaatgtattttgtgtagttATTAGGACTTAATATGGGTGTGctacatttttctttgaaaaaatactttttttgtttgtccttCTGTGTATAGCTCACCATGTGATAGAGGTAGACTTGATTACTTGTTTTCATTAGCTTAatagtgttgtgcaatatagtTTTCAagatttccattttgttttcattaattgaagaagaaaaaacaaatgtgctagcaatttttttttctgcaaattgGAAAGCTGTTAAATGCAAATAAGTATTCTAAAGTACTGctagtgctgttttttttt

Function

GO: NA

KEGG:

id description
K18405 TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7123 lncRNA upstream 29449 34081826 ~ 34090122 (+) True G5788
TU7121 lncRNA upstream 38786 34078351 ~ 34080785 (+) True G5787
TU7098 lncRNA upstream 226428 33892474 ~ 33893143 (+) True G5768
TU7059 lncRNA upstream 347723 33769589 ~ 33771848 (+) True G5750
TU7032 lncRNA upstream 350757 33685727 ~ 33768814 (+) True G5731
TU7144 lncRNA downstream 162248 34292271 ~ 34292501 (+) True G5804
TU7148 lncRNA downstream 251845 34381868 ~ 34382099 (+) True G5808
TU7220 lncRNA downstream 764079 34894102 ~ 34895661 (+) True G5867
TU7229 lncRNA downstream 769613 34899636 ~ 35350027 (+) True G5875
TU7270 lncRNA downstream 1171080 35301103 ~ 35306949 (+) True G5914
AMCG00004115 mRNA upstream 206686 33905291 ~ 33912885 (+) True AMCG00004115
AMCG00004113 mRNA upstream 351935 33767046 ~ 33767636 (+) True AMCG00004113
AMCG00004110 mRNA upstream 358114 33747909 ~ 33761457 (+) True AMCG00004110
AMCG00004109 mRNA upstream 553708 33561024 ~ 33565863 (+) True AMCG00004109
AMCG00004108 mRNA upstream 666899 33435750 ~ 33452672 (+) True AMCG00004108
AMCG00004122 mRNA downstream 1103 34131126 ~ 34133612 (+) True AMCG00004122
AMCG00004125 mRNA downstream 501198 34631221 ~ 34638669 (+) True AMCG00004125
AMCG00004124 mRNA downstream 536369 34666392 ~ 34685790 (+) True AMCG00004124
AMCG00004126 mRNA downstream 565380 34695403 ~ 34724610 (+) True AMCG00004126
AMCG00004127 mRNA downstream 668366 34798389 ~ 34808422 (+) True AMCG00004127
TU6919 other upstream 988385 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 3224744 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 3848047 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 6016360 28062363 ~ 28103211 (+) True G4831
TU7209 other downstream 722840 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 1622510 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 2142169 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 2643978 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 2731524 36861547 ~ 36891746 (+) True G6328

Expression Profile