RNA id: AMCG00004127


Basic Information

Item Value
RNA id AMCG00004127
length 1638
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00004127
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34798389 ~ 34808422 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCCAGACAGCTGTGACGTCACGGGCGCAGCAGCGGGCGGCGAGAGGGATCGGCTGTGCGCGAGCAATGCTAGAAACTTCCCGGCGCGGCGCGACTGTGTGGAAAAGACAACTGATGGAATAGAAGACAGTatgaaaaacatcaataacacaGAAGAGAACAGCAAAGACAGAGAATGGGGCAGCGGTGCGGAGAGCTGTGAGGAGGAGGCTCCCATTAGCAGGAGCTTTTCTGTGGAAGACCTGCTCGATGAGGTTGAGAAGATTGGCACAGTCTCTGCTGGGGACCAAAAGGCAGAGCTTGTGGTGAAGCTGTGGAAGGATGGTTTCACCGTGAATGATGAGGGGCTGAGGAACTACACTGACGAGGAAAACCAGCAGTTCCTGGAGTCAATCAAGAGAGGGCAAGTTACTGTGGAGCTGCCACTGGAGTTTGAAAGAGTATGTATGGCTGAGGAGCTGGAGGTGAAGGTAGAAGACTTGAAAGAAGAAATGTACAAGCCAAGGAGAAAGACATTTCACCCTTTCACTGGCAGAGGATACAGGCTGGGAAGCGTTGCTCCCAAAGTGATAACAAAGTCTTTGCAGAGCCAGGAGGACAGTGAGGGCCTTCCGATCCCATCAGTGGAGCTCAGTGATGTCCAGCCGGTCACCAGCCTCCAGATCTGGCTGGCAGATGGAAGGAGACTAGTGCAGAAATTTAACCTCTCTCACAGGATTAGTGATGTCCGGGAATTCATAGAGAGATCTCATGGAACAGACTTACCCTTCATCCTCACAACGTCGCTGCCGCTCCGGGAGCTCACAGAGGACAACTGCAGCCTGCTGGAGGCAGACCTGTCAAATGCAGTGATTGTGCAGAGGCCTGTGAAAGCTGAAGCCCCCTTTGGCCAGTCTTGATGGGAGACCTCCATTTTCCTCAAGAGACCACACTTCTAGAACACTGTAAAACAACAGATGtcttaagaagaaaaacatatatattaagtaattaaaacaaagctcATCCTCCAATTGTAGTAGAGATACAGTGCATTCACATTTCCCTCccaaaatacaatgcattagcTGATTTCAATACTTCCCAACATTTTGTTGGGCCCCTGGCCCAATTCGGTGCCATCTGGCCAAAGAAATGCatgaaagttaaaacaaaattcaCAAAAACTACAGGgttacagaaatgaaaaaaaagtgtgtaaaatgtaatgtaatacaatgcaaGAAGCggagaataaaatgtacaagtGGTCTGGCTCTTGCTCTGCCCCCTTGCTCTAACCTCCATTCTCCCACCCCTCTCTACCAGTTTTCGATCTCACCCCCCacctctcactctccctcccgTCATCCCCCATGTCTCCCCATCAACAGATTAGAAACAGACTGCCATGCCTACAGTATGTAATTTACTGGGGGAAACACTGGACTGTAATACTTTAATAGCAACCAGTAATTTTACATTGTGACAAACGCAGGATACTTTTCCAAGCTCTGTGTTTATAATAGTATGTATGGAAAGCTCCACACAGCATTAGGACAGAGGCTACCATAGTTACAAAACGTGGTTCGGTGAAAGTTGAAAAATCACTGAAGTCAcgttatttgtatatttaccaATACTGAAGAAGAATTACA

Function

GO: NA

KEGG:

id description
K24349 UBXN2A; UBX domain-containing protein 2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7148 lncRNA upstream 416290 34381868 ~ 34382099 (+) True G5808
TU7144 lncRNA upstream 505888 34292271 ~ 34292501 (+) True G5804
TU7123 lncRNA upstream 708267 34081826 ~ 34090122 (+) True G5788
TU7121 lncRNA upstream 717604 34078351 ~ 34080785 (+) True G5787
TU7098 lncRNA upstream 905246 33892474 ~ 33893143 (+) True G5768
TU7220 lncRNA downstream 85680 34894102 ~ 34895661 (+) True G5867
TU7229 lncRNA downstream 91214 34899636 ~ 35350027 (+) True G5875
TU7270 lncRNA downstream 492681 35301103 ~ 35306949 (+) True G5914
TU7378 lncRNA downstream 647254 35455676 ~ 35455887 (+) True G6002
TU7383 lncRNA downstream 657440 35465862 ~ 35466655 (+) True G6007
AMCG00004126 mRNA upstream 73779 34695403 ~ 34724610 (+) True AMCG00004126
AMCG00004124 mRNA upstream 112599 34666392 ~ 34685790 (+) True AMCG00004124
AMCG00004125 mRNA upstream 159720 34631221 ~ 34638669 (+) True AMCG00004125
AMCG00004122 mRNA upstream 664777 34131126 ~ 34133612 (+) True AMCG00004122
AMCG00004121 mRNA upstream 668366 34119571 ~ 34130023 (+) True AMCG00004121
AMCG00004128 mRNA downstream 11746 34820168 ~ 34834115 (+) True AMCG00004128
AMCG00004138 mRNA downstream 59570 34867992 ~ 34868880 (+) False AMCG00004138
AMCG00004137 mRNA downstream 156044 34964466 ~ 34977633 (+) True AMCG00004137
AMCG00004139 mRNA downstream 364054 35172476 ~ 35173032 (+) True AMCG00004139
AMCG00004140 mRNA downstream 399109 35207531 ~ 35210874 (+) True AMCG00004140
TU6919 other upstream 1667203 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 3903562 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 4526865 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 6695178 28062363 ~ 28103211 (+) True G4831
TU7209 other downstream 44441 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 944111 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 1463770 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 1965579 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 2053125 36861547 ~ 36891746 (+) True G6328

Expression Profile