RNA id: TU7292


Basic Information

Item Value
RNA id TU7292
length 589
RNA type TUCP
GC content 0.42
exon number 4
gene id AMCG00004132
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34954706 ~ 34963885 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTGGTAGGACAGTGTTCGAAATGTAGTTTTTTCGGGGGGTTGTTTTcggtttttgtattgttttgtatttcgtTTTTAACAGTTACAGAAACGGTTAATATAGCCCACGCTGTGTGCCCACATACAGTAATATGCCTTGAGTAGTGACGTTTGAAATGTTGAAGAAACGTGGCGGCTGTTTCGTTTAAATGCAAATTCGGGCTGGAAATGGAtatacaggaagaaaaaaacaatttctcCGGTGCAAAGTGCCTTCTTGTTCCTGTCACGATTTGTGTGATAAACTCGGATGAGGAAGATCCCTTGCCCTGTTTAGCTGAAGACGTTAAAGAAGCAGAACCGAGTTCCACAGAACCTGTCAAAGAAGATTTACCTAAAGCAGGTACTTCTTCCGgtcaagaaaagagaaaaaagttcTCTCATTGGTTGGTTGACTTTGAGAAATTTCAACATGTTCAAAAAAGTGCCAGCAAAATCACTCCTGATGGTATTGTAAGAAGAACAGTCttgcagaagaaaaatctcTTCAGTGAGAAAAGTGCTGAACTGCCATCTCAGAGTAGCTTGGAAGATGTTGTGGAAAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7287 lncRNA downstream 53987 34903366 ~ 34906973 (-) True G5929
TU7222 lncRNA downstream 63053 34872613 ~ 34897907 (-) True G5869
TU7223 lncRNA downstream 82741 34877500 ~ 34878219 (-) True G5870
TU7145 lncRNA downstream 668464 34292269 ~ 34292496 (-) True G5805
TU7119 lncRNA downstream 941449 34015437 ~ 34019511 (-) False AMCG00004120
TU7335 lncRNA upstream 381279 35345118 ~ 35348267 (-) False AMCG00004143
TU7385 lncRNA upstream 509029 35472868 ~ 35475341 (-) True G6009
TU7408 lncRNA upstream 704198 35668037 ~ 35668538 (-) True G6030
TU7412 lncRNA upstream 708612 35672451 ~ 35672679 (-) True G6034
TU7415 lncRNA upstream 710107 35673946 ~ 35676120 (-) True G6037
AMCG00004133 mRNA downstream 11357 34946874 ~ 34949603 (-) True AMCG00004133
AMCG00004134 mRNA downstream 36427 34920611 ~ 34924533 (-) True AMCG00004134
AMCG00004130 mRNA downstream 111773 34836423 ~ 34849187 (-) True AMCG00004130
AMCG00004131 mRNA downstream 166822 34772500 ~ 34794138 (-) True AMCG00004131
AMCG00004129 mRNA downstream 222960 34720364 ~ 34738000 (-) True AMCG00004129
AMCG00004135 mRNA upstream 96223 35060062 ~ 35069488 (-) True AMCG00004135
AMCG00004136 mRNA upstream 116766 35080605 ~ 35086956 (-) True AMCG00004136
AMCG00004142 mRNA upstream 337264 35301103 ~ 35316365 (-) True AMCG00004142
AMCG00004143 mRNA upstream 380824 35344663 ~ 35355767 (-) True AMCG00004143
AMCG00004144 mRNA upstream 410985 35374824 ~ 35375162 (-) True AMCG00004144
TU7224 other downstream 68347 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 825360 34132098 ~ 34135600 (-) True G5801
TU6815 other downstream 2364553 32593627 ~ 32596407 (-) True G5566
TU6786 other downstream 2534397 32407802 ~ 32426563 (-) True G5540
TU6736 other downstream 2651050 32309480 ~ 32309910 (-) True G5502
TU7345 other upstream 390782 35354621 ~ 35414446 (-) False AMCG00004143
TU7893 other upstream 2404146 37367985 ~ 37368822 (-) True G6441
TU8320 other upstream 4878096 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 7412887 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 9557075 44520914 ~ 44522213 (-) True G7608

Expression Profile