RNA id: AMCG00004134


Basic Information

Item Value
RNA id AMCG00004134
length 987
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00004134
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34920611 ~ 34924533 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCTGTCTGTTGTGGGAAACATATCAGTCCTCATCACTGCTTTTAAGAGGTCGTCCAACCTGAAGCCCCCTGAGCTCCTGAGTGTGAATCTGGCTGTGACTGACTTGGGAATGGCCATCACCATGTATCCCTTGGCCATCGCCTCGGCTTGGAACCATGGCTGGCTATGGGGAGAGCCCTCCTGTATTTATTATGGATTCATGGGATTCTTCTTCGGAATTGCCAGTATGATGGTGTTGACTGTAATGGCCCTGATACGTTTTATAGTCTCAACAAGCTTGCAGAGTCCGAAAGAGAAGATAAACAAGAAGAAAGTTTACATCTTGATAATTTTCACGTGGACCTATGCTCTGGTGTGGGCAGTGTTTCCACTGCTTGGCTGGGGAAAGTACGGCCCCGAACCTTTTGGGATTTCTTGCACAATTGCCTGGAGTGAATTTCAAGAGAGCGGATCTTCATTCCTTATTTCCATGTTCACGCTCTGCACAATCGTACCAATTGTGACCATCATAGGGTGCTACTTCGGAATAGCAAGGAATCTCCATGTTGCCTACAAGTCCATTGAAAACAGCAACCATGTCCACAATGCAGTGAAAGCAGAGAGGAGGCTAGTGGGGatcgCTGTGCTGGTCAGCGTTGGCTTCATTGGGTGCTGGGCTCCTTATGCCACAGTGAGCTTCTGGTCGATGTTCCGGGCCAGCGACTCCATTCCCCCAGAAGTCAGTATGCTGCCCTGTCTGTTTGCCAAGTCCTCCACTGCCTACAACCCCTTCATCTACTACATTTTCAGCAAAACCTTCAGAGCAGAAATCAAGCAGCTCACGTGCTTCTGTGGGCGGTCACGCAACTTGTTGAATATGACGGATCGTGGCAGCTTAAGAGAAAGTCAAACGTAtgtgaacatgttaaaaaggCCGATGGATGCTGACAAGGACAAATTACCTGTCAACAACCATGAAGCTGAGACCAAGATACAGTTTATAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7287 lncRNA downstream 13638 34903366 ~ 34906973 (-) True G5929
TU7222 lncRNA downstream 22704 34872613 ~ 34897907 (-) True G5869
TU7223 lncRNA downstream 42392 34877500 ~ 34878219 (-) True G5870
TU7145 lncRNA downstream 628115 34292269 ~ 34292496 (-) True G5805
TU7119 lncRNA downstream 901100 34015437 ~ 34019511 (-) False AMCG00004120
TU7335 lncRNA upstream 420585 35345118 ~ 35348267 (-) False AMCG00004143
TU7385 lncRNA upstream 548335 35472868 ~ 35475341 (-) True G6009
TU7408 lncRNA upstream 743504 35668037 ~ 35668538 (-) True G6030
TU7412 lncRNA upstream 747918 35672451 ~ 35672679 (-) True G6034
TU7415 lncRNA upstream 749413 35673946 ~ 35676120 (-) True G6037
AMCG00004130 mRNA downstream 71424 34836423 ~ 34849187 (-) True AMCG00004130
AMCG00004131 mRNA downstream 126473 34772500 ~ 34794138 (-) True AMCG00004131
AMCG00004129 mRNA downstream 182611 34720364 ~ 34738000 (-) True AMCG00004129
AMCG00004123 mRNA downstream 789616 34078179 ~ 34130995 (-) True AMCG00004123
AMCG00004120 mRNA downstream 889064 34015368 ~ 34031547 (-) True AMCG00004120
AMCG00004133 mRNA upstream 22341 34946874 ~ 34949603 (-) True AMCG00004133
AMCG00004132 mRNA upstream 30173 34954706 ~ 34963885 (-) True AMCG00004132
AMCG00004135 mRNA upstream 135529 35060062 ~ 35069488 (-) True AMCG00004135
AMCG00004136 mRNA upstream 156072 35080605 ~ 35086956 (-) True AMCG00004136
AMCG00004142 mRNA upstream 376570 35301103 ~ 35316365 (-) True AMCG00004142
TU7224 other downstream 27998 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 785011 34132098 ~ 34135600 (-) True G5801
TU6815 other downstream 2324204 32593627 ~ 32596407 (-) True G5566
TU6786 other downstream 2494048 32407802 ~ 32426563 (-) True G5540
TU6736 other downstream 2610701 32309480 ~ 32309910 (-) True G5502
TU7292 other upstream 36427 34960960 ~ 34963839 (-) False AMCG00004132
TU7345 other upstream 430088 35354621 ~ 35414446 (-) False AMCG00004143
TU7893 other upstream 2443452 37367985 ~ 37368822 (-) True G6441
TU8320 other upstream 4917402 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 7452193 42376726 ~ 42379406 (-) True AMCG00004313

Expression Profile