RNA id: AMCG00004138


Basic Information

Item Value
RNA id AMCG00004138
length 303
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00004138
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34852863 ~ 34870320 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCTTGTGAAAGCAGTGCCTATTCCTGGGTGTCATGAAAGATTTGCTCTTGTCGTTGTAGGCATGCTCCAGAACGGGAAGAAGTTTGATTCCTCCAGAGACCGAAACAAGCCGTTCAAATTTAAGATAGGCAGACAGGAAGTCATTAAAGGCTGGGAGGAAGGAGTGGTGCAGATGAGTCTGGGCCAGCGAGCTAAACTCACCTGCACACCAGACATGGCCTATGGGGCTACAGGACATCCTGGTGTGATCCCCCCCAATGCCACTCTCATCTTTGATGTGGAGCTTCTGAAACTGGAGTGA

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0033017 sarcoplasmic reticulum membrane cellular_component
GO:0005528 FK506 binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7148 lncRNA upstream 485893 34381868 ~ 34382099 (+) True G5808
TU7144 lncRNA upstream 575491 34292271 ~ 34292501 (+) True G5804
TU7123 lncRNA upstream 777870 34081826 ~ 34090122 (+) True G5788
TU7121 lncRNA upstream 787207 34078351 ~ 34080785 (+) True G5787
TU7098 lncRNA upstream 974849 33892474 ~ 33893143 (+) True G5768
TU7220 lncRNA downstream 25222 34894102 ~ 34895661 (+) True G5867
TU7229 lncRNA downstream 30756 34899636 ~ 35350027 (+) True G5875
TU7270 lncRNA downstream 432223 35301103 ~ 35306949 (+) True G5914
TU7378 lncRNA downstream 586796 35455676 ~ 35455887 (+) True G6002
TU7383 lncRNA downstream 596982 35465862 ~ 35466655 (+) True G6007
AMCG00004128 mRNA upstream 33877 34820168 ~ 34834115 (+) True AMCG00004128
AMCG00004127 mRNA upstream 59570 34798389 ~ 34808422 (+) True AMCG00004127
AMCG00004126 mRNA upstream 143382 34695403 ~ 34724610 (+) True AMCG00004126
AMCG00004124 mRNA upstream 182202 34666392 ~ 34685790 (+) True AMCG00004124
AMCG00004125 mRNA upstream 229323 34631221 ~ 34638669 (+) True AMCG00004125
AMCG00004137 mRNA downstream 95586 34964466 ~ 34977633 (+) True AMCG00004137
AMCG00004139 mRNA downstream 303596 35172476 ~ 35173032 (+) True AMCG00004139
AMCG00004140 mRNA downstream 338651 35207531 ~ 35210874 (+) True AMCG00004140
AMCG00004141 mRNA downstream 370352 35239232 ~ 35248925 (+) True AMCG00004141
AMCG00004149 mRNA downstream 488542 35357422 ~ 35359998 (+) True AMCG00004149
TU6919 other upstream 1736806 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 3973165 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 4596468 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 6764781 28062363 ~ 28103211 (+) True G4831
TU7437 other downstream 883653 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 1403312 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 1905121 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 1992667 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 2130477 36999357 ~ 37000158 (+) True G6369

Expression Profile