RNA id: AMCG00004141


Basic Information

Item Value
RNA id AMCG00004141
length 831
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00004141
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35239232 ~ 35248925 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGACAGAAACTGGAAGACCCGCCAAAGCctggtttgttttcagaacGACTGAGTGAGCTGGAGCGCCTTCGACAGACCACAATGAGGGTCACTGTCCCCACCCAAAGCCCCCGACCATCCCTCAACAACGCACCAGCATCCTTTAACCCACAGGGCCAAACCCAGATCTCagACCCCAGGCAGTCCCAGTCCTCACCTCCCTGGTCTTATGACCAACCCTATACTCCGTATCTGAGCCAGATGACGCCACCATCCATCCATTCCACAACCCCCCTCTCCTCCACCCGAGCCACAGGGCTTCCTGCTATCAGTGATGTGCCAAGACGACTCCCAGGTGCTTCGGACCTGAGCCCGTTTTCAGACCCTCGGCCATTTGAGCGCCAATTCGCCGGGCTCTCCTCTCTCACAGATAGCCGATTCCCCAGCCCCAGAATGCACTATCCTGCCACATTTACCTACACACCCACACCCGTCACGTCAGGCATGTCTCTGGGGATGTCCACAACCACCCACTACCACACCTACCTGCCTCCGCCTTATCCAGGCTCCACCCAGAACCAAAGTGGACCCTTCCAGACCAGCAGCACACCCTATCTCTACTATGGAGCATCCTCTGGGTCATACCAATTCTCCATGGTGCCAGGGGGGGATCGCTCACCTTCCAGGATGCTCCCACCTTGCACTAGTGCCTCCACCGGCAGCTCTCTAATCAACCCCAACCTCCCCAACCAAAATGATGGGGTAGATGCTGATGGAAGCCACAGTAGCTCTCCGACTGTGTTAAACTCGAGTGGAAGAATGGACGAATCAGTTTGGCGGCCATATTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7220 lncRNA upstream 343571 34894102 ~ 34895661 (+) True G5867
TU7148 lncRNA upstream 857133 34381868 ~ 34382099 (+) True G5808
TU7144 lncRNA upstream 946731 34292271 ~ 34292501 (+) True G5804
TU7123 lncRNA upstream 1149110 34081826 ~ 34090122 (+) True G5788
TU7121 lncRNA upstream 1158447 34078351 ~ 34080785 (+) True G5787
TU7270 lncRNA downstream 52178 35301103 ~ 35306949 (+) True G5914
TU7378 lncRNA downstream 206751 35455676 ~ 35455887 (+) True G6002
TU7383 lncRNA downstream 216937 35465862 ~ 35466655 (+) True G6007
TU7448 lncRNA downstream 571330 35820255 ~ 35820483 (+) True G6067
TU7461 lncRNA downstream 778354 36027279 ~ 36045282 (+) True AMCG00004160
AMCG00004140 mRNA upstream 28358 35207531 ~ 35210874 (+) True AMCG00004140
AMCG00004139 mRNA upstream 66200 35172476 ~ 35173032 (+) True AMCG00004139
AMCG00004137 mRNA upstream 261599 34964466 ~ 34977633 (+) True AMCG00004137
AMCG00004138 mRNA upstream 370352 34867992 ~ 34868880 (+) False AMCG00004138
AMCG00004128 mRNA upstream 405117 34820168 ~ 34834115 (+) True AMCG00004128
AMCG00004149 mRNA downstream 108497 35357422 ~ 35359998 (+) True AMCG00004149
AMCG00004145 mRNA downstream 149455 35398380 ~ 35406953 (+) True AMCG00004145
AMCG00004150 mRNA downstream 202146 35451071 ~ 35455522 (+) True AMCG00004150
AMCG00004151 mRNA downstream 208229 35457154 ~ 35458783 (+) True AMCG00004151
AMCG00004157 mRNA downstream 394071 35642996 ~ 35684393 (+) True AMCG00004157
TU7209 other upstream 368912 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 2108046 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 4344405 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 4967708 30271210 ~ 30271524 (+) True G5245
TU5899 other upstream 7171446 28062674 ~ 28067786 (+) False G4831
TU7437 other downstream 503608 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 1023267 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 1525076 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 1612622 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 1750432 36999357 ~ 37000158 (+) True G6369

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000310_01414325_01452698.mRNA True 1359 mRNA 0.60 6 CI01000310 1414325 ~ 1452698 (+)