RNA id: AMCG00004143


Basic Information

Item Value
RNA id AMCG00004143
length 870
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00004143
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35344663 ~ 35414446 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgTCTGGGCAGCAAGGCTTATCAGTGGCTTTCGACTTGCCCACTCATCGAGGCTACGACTCCGACAACCCCCGTGTACGTGGCGATGTGGGCATGGCTGGTGTTGCTATTGACACCGTGGAAGACACAAAGATGCTGTTCGATGGGATTCCTTTGGAGAAGATGTCTGTTTCCATGACAATGAATGGAGCTGTGATTCCCATCCTGGCCATGTTTATCGTGACTGGAGAGGAGCAGGGCGTCCCTCTGGAGAAACTGACAGGGACCATCCAGAACGACATCCTGAAGGAGTTCATGGTCCGAAACACATACATCTTCCCACCTGAGCCCTCCATGCATGCCATTGCTGACATATTTGCGTATACTTCGAAGCACATGCCCAAATTTAACTCAATTTCTATCAGTGGGTACCACTTACAAGAAGCTGGAGCTGATGCCATCCTTGAACTGGCTTACACCTTGGCCAATGGTTTGGAATACTGCAGGACTGGTCTGAAGGCGGGCTTAAGCATTGATGAATTTGCTCCCAGAGGAGCCAAAGTGATTGCTACTGGCTTTGCTGATTTAGGATTCGATGTAGATATCGGACCTCTGTTCCAGACCCCTCTGGAGGTAGCCCAGCAAGCTGTGGATGCTGATGTTCACTGTGTGGGGGTCAGCACCCTGGCAGCCGGCCACAAAACTCTGGTTCCAGAACTCATCAAAGAGCTGAGGAACCTGAATCGCCCCGATATCCTTGTCATCTATGACCTGCCGGCGGACTGGTGTGGACAGCCACAAGTGAGCAGGATGACCCACAACCAGGCTGAAGAGGAGGAGCTGCCGTCCCCAGAGTCATTCTCGGCACGTGCAAGGGCTGCTGAGGAGTAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004494 methylmalonyl-CoA mutase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0031419 cobalamin binding molecular_function

KEGG:

id description
K01847 MUT; methylmalonyl-CoA mutase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7287 lncRNA downstream 437690 34903366 ~ 34906973 (-) True G5929
TU7222 lncRNA downstream 446756 34872613 ~ 34897907 (-) True G5869
TU7223 lncRNA downstream 466444 34877500 ~ 34878219 (-) True G5870
TU7145 lncRNA downstream 1052167 34292269 ~ 34292496 (-) True G5805
TU7119 lncRNA downstream 1325152 34015437 ~ 34019511 (-) False AMCG00004120
TU7385 lncRNA upstream 117101 35472868 ~ 35475341 (-) True G6009
TU7408 lncRNA upstream 312270 35668037 ~ 35668538 (-) True G6030
TU7412 lncRNA upstream 316684 35672451 ~ 35672679 (-) True G6034
TU7415 lncRNA upstream 318179 35673946 ~ 35676120 (-) True G6037
TU7449 lncRNA upstream 464491 35820258 ~ 35820483 (-) True G6068
AMCG00004142 mRNA downstream 28298 35301103 ~ 35316365 (-) True AMCG00004142
AMCG00004136 mRNA downstream 257707 35080605 ~ 35086956 (-) True AMCG00004136
AMCG00004135 mRNA downstream 275175 35060062 ~ 35069488 (-) True AMCG00004135
AMCG00004132 mRNA downstream 380778 34954706 ~ 34963885 (-) True AMCG00004132
AMCG00004133 mRNA downstream 395060 34946874 ~ 34949603 (-) True AMCG00004133
AMCG00004144 mRNA upstream 19057 35374824 ~ 35375162 (-) True AMCG00004144
AMCG00004147 mRNA upstream 36261 35392028 ~ 35394336 (-) True AMCG00004147
AMCG00004146 mRNA upstream 51480 35407247 ~ 35413748 (-) True AMCG00004146
AMCG00004148 mRNA upstream 64097 35419864 ~ 35423230 (-) True AMCG00004148
AMCG00004152 mRNA upstream 120791 35476558 ~ 35495919 (-) True AMCG00004152
TU7292 other downstream 380824 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 452050 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 1209063 34132098 ~ 34135600 (-) True G5801
TU6815 other downstream 2748256 32593627 ~ 32596407 (-) True G5566
TU6786 other downstream 2918100 32407802 ~ 32426563 (-) True G5540
TU7893 other upstream 2012218 37367985 ~ 37368822 (-) True G6441
TU8320 other upstream 4486168 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 7020959 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 9165147 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 10951159 46306926 ~ 46307319 (-) True G7868

Expression Profile