RNA id: TU7345


Basic Information

Item Value
RNA id TU7345
length 539
RNA type TUCP
GC content 0.55
exon number 3
gene id AMCG00004143
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35344663 ~ 35414446 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acaacatCAGAGCTGGGCAGCAAGGCTTATCAGTGGCTTTCGACTTGCCCACTCATCGAGGCTACGACTCCGACAACCCCCGTGTACGTGGCGATGTGGGCATGGCTGGTGTTGCTATTGACACCGTGGAAGACACAAAGATGCTGTTCGATGGGATTCCTTTGGAGAAGATGTCTGTTTCCATGACAATGAATGGAGCTGTGATTCCCATCCTGGCCATGTTTATCGTGACTGGAGAGGAGCAGGGCGTCCCTCTGGAGAAACTGACAGGGACCATCCAGAACGACATCCTGAAGGAGTTCATGGTCCGAAACACATACATCTTCCCACCTGAGCCCTCCATGCATGCCATTGCTGACATATTTGCGTATACTTCGAAGCACATGCCCAAATTTAACTCAATTTCTATCAGTGGGTACCACTTACAAGAAGCTGGAGCTGATGCCATCCTTGAACTGGCTTACACCTTGGCCAATGGTTTGGAATACTGCAGGACTGGTCTGAAGGCGGGCTTAAGCATTGATGAATTTGCTCCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7335 lncRNA downstream 6354 35345118 ~ 35348267 (-) False AMCG00004143
TU7287 lncRNA downstream 447648 34903366 ~ 34906973 (-) True G5929
TU7222 lncRNA downstream 456714 34872613 ~ 34897907 (-) True G5869
TU7223 lncRNA downstream 476402 34877500 ~ 34878219 (-) True G5870
TU7145 lncRNA downstream 1062125 34292269 ~ 34292496 (-) True G5805
TU7385 lncRNA upstream 58422 35472868 ~ 35475341 (-) True G6009
TU7408 lncRNA upstream 253591 35668037 ~ 35668538 (-) True G6030
TU7412 lncRNA upstream 258005 35672451 ~ 35672679 (-) True G6034
TU7415 lncRNA upstream 259500 35673946 ~ 35676120 (-) True G6037
TU7449 lncRNA upstream 405812 35820258 ~ 35820483 (-) True G6068
AMCG00004142 mRNA downstream 38256 35301103 ~ 35316365 (-) True AMCG00004142
AMCG00004136 mRNA downstream 267665 35080605 ~ 35086956 (-) True AMCG00004136
AMCG00004135 mRNA downstream 285133 35060062 ~ 35069488 (-) True AMCG00004135
AMCG00004132 mRNA downstream 390736 34954706 ~ 34963885 (-) True AMCG00004132
AMCG00004133 mRNA downstream 405018 34946874 ~ 34949603 (-) True AMCG00004133
AMCG00004148 mRNA upstream 5418 35419864 ~ 35423230 (-) True AMCG00004148
AMCG00004152 mRNA upstream 62112 35476558 ~ 35495919 (-) True AMCG00004152
AMCG00004153 mRNA upstream 105577 35520023 ~ 35531270 (-) True AMCG00004153
AMCG00004154 mRNA upstream 228081 35642527 ~ 35643105 (-) True AMCG00004154
AMCG00004156 mRNA upstream 270809 35685255 ~ 35691933 (-) True AMCG00004156
TU7292 other downstream 390782 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 462008 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 1219021 34132098 ~ 34135600 (-) True G5801
TU6815 other downstream 2758214 32593627 ~ 32596407 (-) True G5566
TU6786 other downstream 2928058 32407802 ~ 32426563 (-) True G5540
TU7893 other upstream 1953539 37367985 ~ 37368822 (-) True G6441
TU8320 other upstream 4427489 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 6962280 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 9106468 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 10892480 46306926 ~ 46307319 (-) True G7868

Expression Profile