RNA id: AMCG00004144


Basic Information

Item Value
RNA id AMCG00004144
length 339
RNA type mRNA
GC content 0.51
exon number 1
gene id AMCG00004144
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35374824 ~ 35375162 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGACTAATAAAAGTCACAATTTTACAGCTGGGCAGCAAGGCTTATCAGTGGCTTTCGACTTGCCCACTCATCAAGGCTACGACTCCGACAACCCCCGTGTACGTGGCGATGTGGGCATGGCTGGTGTTGCTATTGACACCGTGGAAGACACAAAGATGCTGTTCGACGGGATCCCTTTGGAGAAGATGTCTGTTTCCATGACAATGAATGGAGCGGTGATTCCCATCCTGGCCATGTTTATCGTGACTGGAGAGGAGCAGGGCGTCCCTCTGGAGAAACTGACAGGGACCATCCAGAACGACATCCTGAAGGAGTTCATGGTCCGAAACACTTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004494 methylmalonyl-CoA mutase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0031419 cobalamin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7335 lncRNA downstream 26557 35345118 ~ 35348267 (-) False AMCG00004143
TU7287 lncRNA downstream 467851 34903366 ~ 34906973 (-) True G5929
TU7222 lncRNA downstream 476917 34872613 ~ 34897907 (-) True G5869
TU7223 lncRNA downstream 496605 34877500 ~ 34878219 (-) True G5870
TU7145 lncRNA downstream 1082328 34292269 ~ 34292496 (-) True G5805
TU7385 lncRNA upstream 97706 35472868 ~ 35475341 (-) True G6009
TU7408 lncRNA upstream 292875 35668037 ~ 35668538 (-) True G6030
TU7412 lncRNA upstream 297289 35672451 ~ 35672679 (-) True G6034
TU7415 lncRNA upstream 298784 35673946 ~ 35676120 (-) True G6037
TU7449 lncRNA upstream 445096 35820258 ~ 35820483 (-) True G6068
AMCG00004143 mRNA downstream 19057 35344663 ~ 35355767 (-) True AMCG00004143
AMCG00004142 mRNA downstream 58459 35301103 ~ 35316365 (-) True AMCG00004142
AMCG00004136 mRNA downstream 287868 35080605 ~ 35086956 (-) True AMCG00004136
AMCG00004135 mRNA downstream 305336 35060062 ~ 35069488 (-) True AMCG00004135
AMCG00004132 mRNA downstream 410939 34954706 ~ 34963885 (-) True AMCG00004132
AMCG00004147 mRNA upstream 16866 35392028 ~ 35394336 (-) True AMCG00004147
AMCG00004146 mRNA upstream 32085 35407247 ~ 35413748 (-) True AMCG00004146
AMCG00004148 mRNA upstream 44702 35419864 ~ 35423230 (-) True AMCG00004148
AMCG00004152 mRNA upstream 101396 35476558 ~ 35495919 (-) True AMCG00004152
AMCG00004153 mRNA upstream 144861 35520023 ~ 35531270 (-) True AMCG00004153
TU7292 other downstream 410985 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 482211 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 1239224 34132098 ~ 34135600 (-) True G5801
TU6815 other downstream 2778417 32593627 ~ 32596407 (-) True G5566
TU6786 other downstream 2948261 32407802 ~ 32426563 (-) True G5540
TU7893 other upstream 1992823 37367985 ~ 37368822 (-) True G6441
TU8320 other upstream 4466773 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 7001564 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 9145752 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 10931764 46306926 ~ 46307319 (-) True G7868

Expression Profile