RNA id: AMCG00004146


Basic Information

Item Value
RNA id AMCG00004146
length 4412
RNA type mRNA
GC content 0.40
exon number 4
gene id AMCG00004146
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35407247 ~ 35413748 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCAATaacgttttaaaatgtaatgattgcACAGTGGTGCTTGCCTACACTCAGAAAGAAAAGCAGGCACAAGTACGGCCAAAACGCCTCTTCTCTTTTGATTGATAACGAGTGGGCGGGACTTCCTGTTTGCGACAGGTCTGTTTACTTGCGCTGCGCTGAGCAGGACCGGAGAGAGCTGTGGCATTGTTCCGTAAATTACGAAGGTGATCCTTTATCATAATGTCACGTCAAGCATTGGAAGCCTGGTGCCTGTGGAGTATTTTGGTCCTAATTTCACTGTGCGTTGTTGCCTCCAGACAAGAAGGGCTGAACAATGTCCTGCTGGTGTCTTTTGATGGGTTTCGGTGGGACTATGTTGACAGGGTTCCAACGCCCAACTTTCACTCACTGATGGGGAAAGGGGTGTGTGTGGAGCACGTGGAGAATGTCTACATCACAAAGACCTTCCCCAACCACTACAGCCTGGTGACCGGGCTGTACGCAGAGAGCCATGGCATCGTGGCCAATGAAATGTATGACCCCGACATCAACCAGACCTTCTCCATGACTAATATGGACATCTACGATTCTGTCTGGTGGAATGAGGCTGTCCCCCTGTGGGTCACCAACCAGGAGATGGGACACAGAAGCGGAGCCGCCATGTGGCCTGGCTCTGATGTCAAGATCCACGGGACCTATCCAACGCACTACATGCTTTACAACGTGTCTGTTCCTTTCGAATCCCGAGTGGATCAGCTAATCGGATGGTTCACAGGCACGGACCCCATTAACTTTGGGGTCCTGTACTGGGAGGAACCAGATGAAAGCGGACACATTCATGGTCCTGAAAGCCCTGTCATGAATAGTGTTATTGCTGATATTGATTCAAAGCTTGGATAtctgctgcagcagctgaaAAAGGCAGCTTTATTTGACAAAATTAACCTGGTTGTCACGAGTGATCATGGCATGGCACAGCTATCAACTGAGAGGATTATTGAACTTGATAAATATGTACCTAGAGACCTGTATACCTTGATTGACAACTCTCCCGTTGTTGCCATTTTACCTAACGAAGgtCAATTTGATAGAGTATATGAGGATTTAGTCAATAAACACCCTAACATGACAGTTTACAAGAGAGGAGAACTTCCTGACCGTTACCACTACAAGGACAACCACAGGATTCAGCCCATAATAGCAGAAGCCAGGGAAGGCTGGACAattgtgcaaaacaaaagtggTAAATATATGTTGGGGAACCATGGATATGACAACAAACTGCCAAGCATGCAGCCAATATTCATTGCTCATGGCCCTGCCTTTCGGAAGAACTTTACCCAGACGTCTATGCAATCTGTGGATCTGTACCCACTGATGTGTCACATCCTCGGGGTCACCCCAGCCCCAAACAATGGCTCGCTTAACCACGTAGAAGACCTCCTGGCTGAAGCCTCTCCCCATGTTCCAGGTGATAAGGGAGGTAGCACATCCTATGCCCTGTTGTTCGGGGTGTTACTGGGTACCATTCTTGTCATCGGCTTTCTCAGTGTGTTTGTTAAGCAGGTGACTCTGAAGCAGCTCCCCACAGTATCCGTCACTAACATTGAGATCGTACAGCCACTACTGCAAGATTAGCCTTTTCAGTTGTAGAAGGCTATACATTAAATGCTATGTCAAGTACAGGAGAGGGGCGTAAGAACAAACATGAATGCTGGCAATAGGCAAGTTGGCAATTTGTACCTGGGTTtggtgtgtttctgttgttttatttttttgcagtcttgtttttgtctgtcCTGATGTGCAGCAAATGCAGGTAAACATTGTTTTGGGACCAATTCTGTTAGCTTTTACCGAGAGAAAAAGTATTAGTGGAAGGATCGTTACTCTAGGCAATTAAAGAAAGATATATTGTTTCCCCATGTTCATTTATATATGGTACATCTATTAGTGAGGGTCCAGCTGGCCACATTGTGGATATATatagacatttcagtttttcgTAAAAGTATCAGTTCTAAGGTATAGGTCACAACGCATTAAACTGAATGTTGTTCAAACAAATCACTCAGAACTGAGCTGCAGAAGATGTACAAAGAGACCAGTATATAGAATCTTAAACCTTCTAAGATAGATGAGGCCATAAGTGGATcataagaaagaaaagtaaacaataTTACTTATGGAGCAAACAAAGCCATATGtatgtttaataaagaaatcagGTATAATTCAGAGTTGCAAGTGGCAACtttctgtgtgtattgtattcatatatGTACATCTATATCATGTCATCTAAAAATAAGGGAAATATTATCaatatagttatttaattttttattgaattggaTGGATgggtaaaacaatatatttaatcctGGCCATAGTGTTACATTTAACAACAATTCATTTTTGTGTCTTATTGTGCTAAATATGCTGGATGTGCTCATGGTATAATAGGAATAATTGGTAGTGCTGTGCTAACAGTGGATCTCAGAAGACCTATGACCACTAGAGCACACGTGTGATTCATAGCCCCTCCGCTGTATGActgaagacacacagacagacatcagTCTAAGACTAAACTAGAGAGTCATGCAATAGTATAGGTTTGAGGAGGAGATTAATCCATGAATACAGGATGGCTTATTACACAAAGAAGGCATCTGTGAACATGTTAATGAATAGatgtttgtatgtgtagttTGTTATTCAATAGAGGAATGAACCCAAAACTTTGCCTGTATTGTCAGCACCCTAGTTACATAATGGCCACAATACCACTAAAGCCATCTGCTTGCAGATGTTCTCACATACTTGTCCTCAGCAGTTATTTATgcttgaaataatacaaataccaaaACCTTGGTAACCTGACAAATAATTAAGATTTCTGAGCCACTGGAAATGCATCCATATAATTCATTCTCGGAAGTGTCATTAGCACTGTGATTCACTTTAATGGtacatgaattaaaatgtatattttgatgcACTTTCTGTGGTAGTTGATGCCTTATGTTATTATAAATGACTTAACCTAGAGTTATTGTGGAAAGGGATTCAATAAAGCATTGACTTTCAAATGCTTCTGCCTCAAAGCTTTGTgtacattgtaaaaatgtaaaggtacAAACCTATAATTTGGAGACACTGtaattatacagtactgtattgtgGTTTAATCAttctaaaaaaatgaattatattgGAGATCAGAGAATTGGGAAAATTATGCAACTGGAATCAAAAGACTGAAGCCATGCACAAAGAGCTGTgaacacagttttgtttttggtttagtACCACTTACTACACTGGCTTGCACAGACAGGGCTGAGTGATTTCTGGATGCTAAACACTTGCAGATATAAACTTTGTTGCACTGCTACTTTGtagaattaattttgaaaatctaaaatatgagtgtatctttaaatgatttcatATTGATTCCTAACCAAAATTGAAAGTATGGGAATACATGCATGAATAGTAGAAAAACATGAGATTCttattaggcaggtgtgaacacCCATTTTCAATGTAACATGTTTGAAGGAATTTACCTAAAAGCCGTGAAGCACAAATTGTATTCTGGTGTCAAAATGTGTTTAGACATGTCATGggcattttgtttgtggttaATTTGAGGTGTCTTGGGAGGTTGGAATATCTGCTTACTCTTTTTAGTCACAAATCTTGCTTATTGAATATCttgtatatttactgtattgCCCTGTCATAGGCATAGgatgtccccccccccacaatgttgagagaatgttacatTGTCCCCACCAATAAAGTGAGCCTGGATCCATAGGCTCATCCCCCAagttctgaaaccaaacctatgccACTGCCCTCTGTAATGTTCTTAATTAACTGAATCCATTATTTAGGTGTATAGAAACAGATTTCAAATGAGGTacaacaaatacagtataataatttacaaatgtacaaaagcCATTCAaactttgtgtgtatttttgtagtATTACTGATTCTTCAACATCTTACACAATAACTGGAAATAACTGgccaacacaaaaaaataaatgttgtcaaCTAAATTAAGACTGGATTATGAGTTGAAGGATTGCTTTGGTCTTGTATGTGCCTGGTCTTTACATATCCCTACTTCACTCCACATGCCATCAGTGGATTTGCTTTCATGTTTCCCCAGGAAATGAAGAAACCAAAGGAAACTACAAGCAGTGTAACTACTAAAAAGCGGAAACATTACTCAACTTTgctgtgttaatgtgttttccAGTCATTATTACTTCATATGTTCCCATGTTTTGCTTCAGTAAAACTGGACACTTAAAATGACTGAGCAATGTATTGAATCCTGCAGAATTGCACTCCGCCATTGTCTGAATAAAGCTTAATTTTCAGTTGTAATTGTGAA

Function

GO: NA

KEGG:

id description
K18398 ENPP5; ectonucleotide pyrophosphatase/phosphodiesterase family member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7335 lncRNA downstream 58980 35345118 ~ 35348267 (-) False AMCG00004143
TU7287 lncRNA downstream 500274 34903366 ~ 34906973 (-) True G5929
TU7222 lncRNA downstream 509340 34872613 ~ 34897907 (-) True G5869
TU7223 lncRNA downstream 529028 34877500 ~ 34878219 (-) True G5870
TU7145 lncRNA downstream 1114751 34292269 ~ 34292496 (-) True G5805
TU7385 lncRNA upstream 59120 35472868 ~ 35475341 (-) True G6009
TU7408 lncRNA upstream 254289 35668037 ~ 35668538 (-) True G6030
TU7412 lncRNA upstream 258703 35672451 ~ 35672679 (-) True G6034
TU7415 lncRNA upstream 260198 35673946 ~ 35676120 (-) True G6037
TU7449 lncRNA upstream 406510 35820258 ~ 35820483 (-) True G6068
AMCG00004147 mRNA downstream 12911 35392028 ~ 35394336 (-) True AMCG00004147
AMCG00004144 mRNA downstream 32085 35374824 ~ 35375162 (-) True AMCG00004144
AMCG00004143 mRNA downstream 51480 35344663 ~ 35355767 (-) True AMCG00004143
AMCG00004142 mRNA downstream 90882 35301103 ~ 35316365 (-) True AMCG00004142
AMCG00004136 mRNA downstream 320291 35080605 ~ 35086956 (-) True AMCG00004136
AMCG00004148 mRNA upstream 6116 35419864 ~ 35423230 (-) True AMCG00004148
AMCG00004152 mRNA upstream 62810 35476558 ~ 35495919 (-) True AMCG00004152
AMCG00004153 mRNA upstream 106275 35520023 ~ 35531270 (-) True AMCG00004153
AMCG00004154 mRNA upstream 228779 35642527 ~ 35643105 (-) True AMCG00004154
AMCG00004156 mRNA upstream 271507 35685255 ~ 35691933 (-) True AMCG00004156
TU7292 other downstream 443408 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 514634 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 1271647 34132098 ~ 34135600 (-) True G5801
TU6815 other downstream 2810840 32593627 ~ 32596407 (-) True G5566
TU6786 other downstream 2980684 32407802 ~ 32426563 (-) True G5540
TU7893 other upstream 1954237 37367985 ~ 37368822 (-) True G6441
TU8320 other upstream 4428187 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 6962978 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 9107166 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 10893178 46306926 ~ 46307319 (-) True G7868

Expression Profile