RNA id: AMCG00004147


Basic Information

Item Value
RNA id AMCG00004147
length 948
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00004147
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35392028 ~ 35394336 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCTTGACTGTTATAGGGAATGGGGCTGTCCTAGTAGCTGCAGTGAAGAAATCCTCTCAATTGAAGCCTTCAGAGCTCCTGAGTGTAAACTTGGCCATTACTGACCTGGTTGCTGCTCTCACAATGTACCCTCTGGCAATTGCCTCTGCCTGGAACCATGGCTGGCTTGGTGGAGACACTTCCTGTATTTACTACGGGTTAATGGGATTTCTCTGTGGGGTGGCAAGTATCATGACCTTGACAGCAATGGCAGTGGTACGGCTAATAATTACAACCAGTTCCACTATCACAGCCAACAATATCAACCGGAGGAATATTCAGATTTCCATAGTGTGCATATGGCTATATGCTCTGGTCTGGTCTATATTTCCTTTATCTGGCTGGGGTGAATATGGACCGGAGCCCATTGGTACCTCCTGTACAATTGCCTGGGCCGAAGCACACAACTCCTGGAACACATCTGCCTTCATCACTGTCTTCTTCATCATCTGTGTCATCCTACCAGCCTCCACACTCACCCTCTGCTACTCCTGGATAGCCTTGAAACATTACCAGGCCTACCGGAATATGAAGAGTAATAAACGtatcttcaaaacaaacaagatgcaAAAGAAGCTCACTGTGATGGCTGTGCTGGTGAGTGTTGGCTTTCTTGGCTGCTGGGCTCCCTATGCTGCCATCAGTTTGTGGTCGGTGTTCCACTCGAGTGTCAACATCCCCCCCACTGTCAGCCTCCTGCCCTGCCTGTTTGCCAAGTCCTCCACTGTGTACAACCCCTTCATTTATTATGCCTTCAGCAGTACCTTTCGCAAGGAAATCAGGGAAGTCAAATTCTGCTGCATTGGCCAGGTCCAAGTGCCTATTGGTGACCCCGCAAGAAACCAGCCCAGTGTTAGGTGGATGAAAAGGAACAATGTCCAAATTCAGCCCTTCCAAGAAGAAAACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7335 lncRNA downstream 43761 35345118 ~ 35348267 (-) False AMCG00004143
TU7287 lncRNA downstream 485055 34903366 ~ 34906973 (-) True G5929
TU7222 lncRNA downstream 494121 34872613 ~ 34897907 (-) True G5869
TU7223 lncRNA downstream 513809 34877500 ~ 34878219 (-) True G5870
TU7145 lncRNA downstream 1099532 34292269 ~ 34292496 (-) True G5805
TU7385 lncRNA upstream 78532 35472868 ~ 35475341 (-) True G6009
TU7408 lncRNA upstream 273701 35668037 ~ 35668538 (-) True G6030
TU7412 lncRNA upstream 278115 35672451 ~ 35672679 (-) True G6034
TU7415 lncRNA upstream 279610 35673946 ~ 35676120 (-) True G6037
TU7449 lncRNA upstream 425922 35820258 ~ 35820483 (-) True G6068
AMCG00004144 mRNA downstream 16866 35374824 ~ 35375162 (-) True AMCG00004144
AMCG00004143 mRNA downstream 36261 35344663 ~ 35355767 (-) True AMCG00004143
AMCG00004142 mRNA downstream 75663 35301103 ~ 35316365 (-) True AMCG00004142
AMCG00004136 mRNA downstream 305072 35080605 ~ 35086956 (-) True AMCG00004136
AMCG00004135 mRNA downstream 322540 35060062 ~ 35069488 (-) True AMCG00004135
AMCG00004146 mRNA upstream 12911 35407247 ~ 35413748 (-) True AMCG00004146
AMCG00004148 mRNA upstream 25528 35419864 ~ 35423230 (-) True AMCG00004148
AMCG00004152 mRNA upstream 82222 35476558 ~ 35495919 (-) True AMCG00004152
AMCG00004153 mRNA upstream 125687 35520023 ~ 35531270 (-) True AMCG00004153
AMCG00004154 mRNA upstream 248191 35642527 ~ 35643105 (-) True AMCG00004154
TU7292 other downstream 428189 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 499415 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 1256428 34132098 ~ 34135600 (-) True G5801
TU6815 other downstream 2795621 32593627 ~ 32596407 (-) True G5566
TU6786 other downstream 2965465 32407802 ~ 32426563 (-) True G5540
TU7893 other upstream 1973649 37367985 ~ 37368822 (-) True G6441
TU8320 other upstream 4447599 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 6982390 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 9126578 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 10912590 46306926 ~ 46307319 (-) True G7868

Expression Profile