RNA id: AMCG00004152


Basic Information

Item Value
RNA id AMCG00004152
length 6682
RNA type mRNA
GC content 0.41
exon number 9
gene id AMCG00004152
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35476558 ~ 35495919 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGATAAACTGTGTTTGGGAGTACACCGAAGGTCTGTATCGGGAGCGGAAGGGGAACAGTGTGGAGAAAGCGGGACAGGGACACGGAAGGAGATGCCGGACGCTTGTGAGGCAGCGGCTTGCTGGTGACGGGGGTCGGGCGGCGGGGCGTGAAGTGCCGCTGCTGGCTGCGATGTTGTtgtggcagcagcagtgatgTCATCGGGGACTCCGAGAACTCTTCTGCTGCGGAGGTAATGAAGATGATCTGCACATAGACatggaggaggatggaaagaaagcaaaaaagCCTGGTATCGTGTCACCATTCAAACGTGTGTTCCTGAAgggggagaaggggagggacAAAAAGGCCCAGGAGAAAGTGACCGAGCGAAGGGCTCTGCACACCGTCCCCCTGTCCCTCCCAGAGCACCGCGTTGACCCCGACATACTGCTCAACGACTACATTGAGAAGGAGGTCAAGaaaGCTCACCAGCTTCCTGGCCAGTTGACAACAGATCAGGACGCTGTGGTCAGTCTTTCTGCATACAATGTCAAACTGGTGTGGAGAGACGGCGAGGATATCATACTCAGGGTCCCCATCCACGACATCGCTGCCGTGTCCTATATCAGAGACGACTCTCTGCATCTAGTGGTGCTCAAGACAGCTCAGGAACCTGGAAGCTCACCCTGTCCCAGTACGTGCCCTGAGGTTTCCAAGTCCCAGACGCTGGGCTCGCTGACCGAGAGCGGAGCTGTGCTTGTGGAGGTCTGCTGTCTGCTTGTGCTCGCTGCAGAGAATAAGGTAGCAGCTGAGGAACTATGTTTGCTTCTCAGCCAAGTCTTCCAGATTGTTTACACAGAATCTACTATAGACTTTTTAGACAGAGCAATATTTGATGGGGCCTCCACGCCTACCAGACATCTGTCTGTGTACAGTGACGATTCCTCTAGTAAAGTGGATGTTAAAGAAGCCTTCGATACAGAAGCAAGTACATTCTCCTTCCAGGGCTCCCTAGACACAGGAGGGAACTCCCCGTCCTCCTCCTCAACGCCAGCCTCCCCCCAGGCCAAGACTGTGAGCGAGAGCGAGCTGAGCACCACTGCTGCTGAGCTGCTGCAGGACTACATGCAGACGCTGCGAACAAAGCTGTCATCCCATGAGATCCAGCAGTTTGCCATGCTGCTCCATGAGTACAGGAATGGCTCCTCCATTCACGAGTTCTGCATCAACCTGCGCCAGCTCTATGGAGACAGCAGGAAGTTTCTCTTACTAGGACTCAGGCCTTTCATTCCAGAGAAGGACagccaacactttgagaacttCCTGGAGACGATTGGTGTGAAGGACGGCAGAGGTATCATCACAGACAGTTTCGGGAGGTACCGACGGGCCATGAGCACCACTTCCAACTCCACCACCAATGGCAATGGAGCGGCCGGCGGCTCAGACGACCAGTTAGCCCCCTCCGAAGGGGACGAGTGGGACCGCATGATATCGGACATCAGCAATGACATTGAGGCACTAGGGTGCAGTATGGACCAGGACTCTTCCTGAGGaagtgggtgggggtgggtgttGATGGTCGGGTGCCTGGAAATTTGAATATGGACATCATTTGGTTGTCTTCTTAGTTCCACCGTTTTGTACTGCCCTCTCTTCTTTAACCCCGTTTTGAGAGTGTGCTCCTCTAACGGATGACCAGATGGCTTCTACTTAAACTGCTTTGTATGGATGAGTAGACTTTGTTATGAAcattcacaaaaagaaaaggggtAAGTCATAGCCTTATCTTTCTAATTTGAGCCCATGCATACATTGTGACACTCAACAGACCCACATGCGCATCTCAAATTGTAGCAAACATGTAGACGTCTGTCTCTGTTCAGTCTAGAGAATACTACAGTGTTGTTTTCAACTAATCTGAGCCCCATTTGATGCAGGCTATCATACGTTTACTGTCCTTGGTCCCTTAAACATCAGCaggtttgcttttaaaataacatttcaatccATATGTGTTCTATTTTCATGATAGCTAACATTATAGACATCAGTAATAGCAAATAACCATGCCGGTATTAATCCTAAACCAACACAAAAACCAACAGCCTTGCCCTCAGCAGTATTTCCTAAATGTATTGCATGTTATTCCACTGCTTTGTTGTCTAAAACATTCTCACTTTTGTTGGACAATAGCCTTTCTTTCAGTGGCTCAGTCACTTCTGGTCttgaagatttatttaataACTATGACACTTTGCTGGTCCACTATCTTCAACAGAATAATTTGTCAATACTTTtgtaaaggaaaaaagaaacaaaagacaagacGAGACCACTCCATGGTTGAgtaaaatgttgtgaatgtgtactgcattttagatttttgaAATTGGTACAACACTTCCTTTCccttcaatttcaattttattttttattttatttttatccagaAACGTTTTAACTTAAACGAGACGTGGGAAACTGAGACATGCAATATTCACATTAATGTCGTGAATTAAACCAACACGGGAAGGTGAGAGAGATCCTGGCAATTTATCTGTTGCGTAAAACTGCTTTATTGAGTTTTGATTTCCCAtcatttaactatttatttatttttgtatacaatgTGAAACCTCTGCAAAATGGAGTTCTTAGTATTTGCAAAATACTACTAAGTTGTTCTTTTTAAGTGTACTTATTTTCTTATAATAGGAAGCAAACCGGTTCCAACAGTTTGTAACTGGCTAATGAGTAGAGCACACCCCCGTGAGAAAGTCTAGATCGTTTTTATTCCCAGTGATCCATGGGAGCTGGATCATcagtttttcttctctctgccCTTACTCAAGATCTAGGCTTCACCACCACCAGGACATTTGGAAACAGTTAGTGAATGAATAATGTGACTTAATCCCAACTAATTAAGTGGTCTTCATTAGTTCATTAGTCTTCATCTATGTCTaagaaattcaattaaaaaacaaatatttagtttcAAGTGCGTTACATAGCCAGTTCATTTTATACAAGCAGTAGACTTTTGTATTGAAGCCAGCATCAGCTGCTTGGTATTTCAGGTGGACtcgcacagacagacagcagttCAAATAATGTAGTATTTGCCTTCCAAGTGTAACACAGCCTAAAGCTCGCTACAATGCTCATACAGAGCAAAGAGAAAGTAAACAAGTGTTGACTAAcgcaaatttatatttttcctctgCTTAACATCCTGACATCATTACTGCCAACCATTTTGCTTTCCATTaatttttctttctgatttattttaaagtgaatttaAGTGATGATCAGTATTTAAGGTCTATTTGAAACCGACCTAAATGTTCTGTCATAAAGCTCATGTTCTCTTTGGTTTAGGGGGACATAATCGTCAATATGATTATAACAGCAGTGCTCATATGGGATTGTAAAAAtgccaaatattttaaaatgtggacttttgagaaatgtaatgcattttccTTGTCTGCAGTCTTAATCACCCTTCTCAGTCTTATTCTTTATACGCTTGGTAGACACAATCCGCATATAGCTagtcctttgtgttttttccctcttttcaaAACCTatagtaaaaacattaatagaaaaaaaaatatatagtgtgaTTTAAGTTACAGACGAAAGGTTTGAGTAGCTATTAACTAATGATCTTAGTTAATATTTAAGTTTACAAACTATTCttattgaaacaaaaataaaatcctgtgtCTGATTTGAACTTCTGCATTGCAACATACAGAAAGGAAATATCAGAGTTTCAGACTCCTGCTACTACTGTTCCCTTTATTcctttgtttatatttgaaacTATATTCAAAGCAGTGTAGGAGCCACTGTGAATCTCACCCCTGAGCTCATCAGCCTTTCTGGACAGACCACAGTTGATTTATCTGAATTTGAAATCAAACAGCAACCAAAGATTTAAATGAAGTTAAACCTATATAGAATCACCTAAGATGGAGGACACATGTcgtcttgtgtgtttgttatggCCTAATGTTAGACAGGTTGAAAAGACAACACAGCATTCAGGCATGCCTCTAGATTTTAAGAACTAAAGATAAAAAAGAACACCTGTAAAGAAACCCTTAAGGTTTCTGTTCAGTTGTTTGTGTCCAGCTGTGTTACAGAGTGGCTTTTATCTAATCTCCTGCTACAGCCTTGTCTTTTACACTATTTGCTCATAAAGCTGCACCGTTTGGACTTCGGTTTCacataattaaaggaaaatcacTTATTACTCAGCATTACAGTCTTCTGAATAATACGTTCTATTCCATGTTTTGACTCGTGGGGAAACTCATAGGTACTTTGGGACCAGATCAGGGCCCTGTCCTTGTGCCGTGGCAGTTGACAAGGCTGTGTAAACAGTCTCAAAACTGTTGTACTTACCTTGTAATCTTAAGAATCAACGTTTAACCGTGTGAAGCACCATCACAGTCTCCCAGAGCTtgttaaaatcatatatatgtgtgtgtatgtgttcaaTCCTTGCTATGTGCACATAGACCAATTTTACCATTGAATAGTGCAAAGCGCACTTAACACATCTGTAACCGTAACCAACCTTTGAGGGCAGCATACTACATGGAAGGAATTCACACCTTTTTTCAAGCTGGAGAAGGTGTCAAGTGATCTCTTAATAGCTGATTTGCATACCACAGAATTACCTTTGCTGCCATCCTGAAGATGTTTCAGCTGGGTTTGTATGGTTTGTTTACTGGGCTTGCATTGGCTCATCGTGAAATAGTTGCTGACCCGGGGACATGCGTGAATACCCAGCAGCCTCAGGtcaaaatgcattgtgggaaactGGAGTAAAATGTGAAGTTCATAGTGCAATTGCTTGTTAATTATCTTCAAAGAAATAGGGATGTGTTCAAAATTGATGAAagtctatgtatttgttttcttaagctTTGTTAATGTTCCTGTTCTTGTGCCTCAGCACTATTGCTTTACAATCAGTTATGTTTTTCTTGCCATTTGATCACTTTCTATTGttattacagtgtttttgttatgtttaccCCATATTGTGTTGAAAAATGCCTAAAATGGTTTGTGTTCTGTACTTGCATTagattttttcctttccaaGGTTCGCTTCAAGcaccttctgtttttttttgttcatttcccCAATGTTTTTTGTACACCTTTCCCAACTGGCAAAGATACAAATGTATGGTTTTCGCTCCCCCTGTGTCTTCACACTGATTATTGTGCAGACCCTGTGCTTCTAAACGGTTCCAGAGAGGGCATTTGTTAAAGTACTCGTATCTCTTTATAGACAGATTTTAagaatttgtttgcatttcctcATGTTCTATAGAGGTACGTTCACATGTGTTTCTATGTAAAGTTGCAgaagttttaatttatcaagactcagaccatttattttttacagagctgaataaaaaaaaaatcccccctTTGTTTAAAAAGTTGGGGTCACCATGAGTGCCTGTGTAAAGAGAAAATTTAAGgttattttgtttccctttgtgtCCTCTGACTCCTATGAAAGTGGGGGGctaagctttattttctgtcttacTTTCCACTTGAAGCAATAATGAGTAATGAACCAGAGACCTACGCATCCAGGAGAGATTCCCCATCCATGCATACTGTCCATGATTTCCTGTGGGGTCTTGTCGAGTCCATGTCCTGCACAGGGATTGCCATTCTGCTTTTGCAAGGAGAACATTTATGGCCAAGTGGCTGGAATTTCAGCAGTCCGAGATTTAAACCCAGTTCCCTTATTATAAGAAGTAAATGCAGTGCCATCTTGTACCCATGCATGTAAGATGTACAAAAGAAGATATTGACTCACAGAGAGACCCTAAAGGATactattttcaattaattttatatttgcagATTTATATATGGCTGTATATAGTGAAATGCCTTTTCAGTTTGTGCTTTCTTAATTTTTATCCTACAGCTTTGTGTATAGTTTCCCCCAACCctttttttaaaagataaagaTTGTACGATATGCACtggtgttttgtgtgttatttgcAGTCTTGGACAGTGGGCTTAGGAGTTGatttatgaaataaatgtataaggCCTTTTGGTATTTCATATTCAAGTGTTGACCAGGTGTTTCTAGAAAGAGACATTTATATTTGCAAAGACCAAACTTGTTTCACCTGCAGATGGTGCCAGAGTCATTCTGAGAAAAGAGGACTTTTCTGCAATGATCTGTGTCCAGGTCTAGACATGAGCAAGTATTTTTTTGAAGAAAGTACAGCAATAATCTAGCACTGCTGCCCCCCCTTTTtatgacagaaatgtaaaatagcCCCCACAAATGCCTGCTTCTAGTCTTCTAGTATACAAGAATGTGTCTTTCCAggtaaggtgtgtgtgtgtgagtgagagtgtgttttaatttgtatttatttcatttacttAGATCAATAGATTTCCCACAGAGAATGAACACCTCACTTGTGGTGAAAAACAACTGCATCAAGAGCTAAATGTTGTAACATTTGCCTCATCAGTATGTCAGAATAAGCTGCTTATAGGTATAAAATCTAATAATTGTACCTCCCTTGATTACCTTGTTTGTACTTTCCTCAGCCTATATTAACACGGATGCATTCTAGttagtaaataaaattaatgttcaTAAAGAACAA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007043 cell-cell junction assembly biological_process
GO:0001570 vasculogenesis biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7385 lncRNA downstream 1217 35472868 ~ 35475341 (-) True G6009
TU7335 lncRNA downstream 128291 35345118 ~ 35348267 (-) False AMCG00004143
TU7287 lncRNA downstream 569585 34903366 ~ 34906973 (-) True G5929
TU7222 lncRNA downstream 578651 34872613 ~ 34897907 (-) True G5869
TU7223 lncRNA downstream 598339 34877500 ~ 34878219 (-) True G5870
TU7408 lncRNA upstream 172118 35668037 ~ 35668538 (-) True G6030
TU7412 lncRNA upstream 176532 35672451 ~ 35672679 (-) True G6034
TU7415 lncRNA upstream 178027 35673946 ~ 35676120 (-) True G6037
TU7449 lncRNA upstream 324339 35820258 ~ 35820483 (-) True G6068
TU7459 lncRNA upstream 483520 35979439 ~ 35979839 (-) True G6077
AMCG00004148 mRNA downstream 53328 35419864 ~ 35423230 (-) True AMCG00004148
AMCG00004146 mRNA downstream 62810 35407247 ~ 35413748 (-) True AMCG00004146
AMCG00004147 mRNA downstream 82222 35392028 ~ 35394336 (-) True AMCG00004147
AMCG00004144 mRNA downstream 101396 35374824 ~ 35375162 (-) True AMCG00004144
AMCG00004143 mRNA downstream 120791 35344663 ~ 35355767 (-) True AMCG00004143
AMCG00004153 mRNA upstream 24104 35520023 ~ 35531270 (-) True AMCG00004153
AMCG00004154 mRNA upstream 146608 35642527 ~ 35643105 (-) True AMCG00004154
AMCG00004156 mRNA upstream 189336 35685255 ~ 35691933 (-) True AMCG00004156
AMCG00004155 mRNA upstream 200703 35696622 ~ 35720187 (-) True AMCG00004155
AMCG00004162 mRNA upstream 671382 36167301 ~ 36172699 (-) True AMCG00004162
TU7345 other downstream 62112 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 512719 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 583945 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 1340958 34132098 ~ 34135600 (-) True G5801
TU6815 other downstream 2880151 32593627 ~ 32596407 (-) True G5566
TU7893 other upstream 1872066 37367985 ~ 37368822 (-) True G6441
TU8320 other upstream 4346016 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 6880807 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 9024995 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 10811007 46306926 ~ 46307319 (-) True G7868

Expression Profile