RNA id: AMCG00004153


Basic Information

Item Value
RNA id AMCG00004153
length 1263
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00004153
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35520023 ~ 35531270 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCTCCTGTTCGCTCAAATGTCCATTGCTGTCCATTGCTATCTCTAACaggcctctccctctcctcttttGTGTCTGGGCCTGCAGGTATATCCGTACCATGTACCTGGGCATTCAGAGCCGGCGACAGAAGGAACACCAGCGACGTTTCTACTGGGCCATGATGTACGAATATGCAGATGTCAACATGCTGCGCCTCCTGGAGACCTTCCTGGAGAGCGCTCCCCAACTGGTGCTACAGCTCTGCATAATGATCCAAAAGAACCGGGCGGAGACACTACAGTGTGTCTCATCTGTGGCCTCCCTACTCTCCCTGGCCTGGGTGCTGGCGTCCTACCACAAACTCCTGAGAGACTCACGGGATGATAAGAAAAGCATGAGCTACCGGGGCGCGCTGATCCATATCTTCTGGAGGCTCTTCACCATCTCCTCCCGGGTGCTCTCCTTTGCCCTCTTTGCCTCCATTTTCCAGCTCTACTTCGGGATCTTCGTGGTGGTCCACTGGTGTGCCATGGCCTTCTGGATTGTCCACGGGGGAACCGACTTCTGCATGTCTAAGTGGGAGGAGGTGCTTTTCAACATGGTGGTGGGCATTGTCTACATCTTCTGCTGGTTCAACGTCAAAGAAGGCAGGACCCGATACCGCATGGTGGCCTACTATGCGGTGGTGCTCATCGAGAATGCCATCTTGACGTTCCTGTGGTATTTCTACAGGGATCCCACCACCACCGACTCTTACGCCGTTCCCGCGCTCTGCGGTGTGTTCCTCAGCTTTGCCTCGGGGGTGGTTTTTATGTTCCTCTACTACGGAGTGTTGCACCCCATGGGCCCCCGGGTCCGGATCCTGGCCAGCTCCTGCTGTGCTGAGTTGCTCTGGGGGCTACCTCTGCCTCCTGAGGCTGAGCCCATGGCCCCCACCCCAGGGCCAAGAGGCTCCCATGCCACCCCTACCCGGGGCTCCACTGGGGACCACCAGCAGCATCAGGAAGAGGACCTGACTGCCGACACTTGCCTGCCCGTTTTCCAGGTGAGACCAACGGTGCCAACCACCCCCATGGGAAGGCCTTACCACCCCGAAGGTCCCCTCATCAAGATCGATATGCCAAGGAAGCGCTACCCAGCCTGGGATGCCCACTTTGTGGATCGCCGGCTGAGGAGGACTATCAACATCCTGCAGTACATTACCCCCACAGCGGTAGGGATCAGGTACAGGGACGGGCCCTTGCTCTATGAGCTCCTACAGTACGAGTCTTCGCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7385 lncRNA downstream 44682 35472868 ~ 35475341 (-) True G6009
TU7335 lncRNA downstream 171756 35345118 ~ 35348267 (-) False AMCG00004143
TU7287 lncRNA downstream 613050 34903366 ~ 34906973 (-) True G5929
TU7222 lncRNA downstream 622116 34872613 ~ 34897907 (-) True G5869
TU7408 lncRNA upstream 136767 35668037 ~ 35668538 (-) True G6030
TU7412 lncRNA upstream 141181 35672451 ~ 35672679 (-) True G6034
TU7415 lncRNA upstream 142676 35673946 ~ 35676120 (-) True G6037
TU7449 lncRNA upstream 288988 35820258 ~ 35820483 (-) True G6068
TU7459 lncRNA upstream 448169 35979439 ~ 35979839 (-) True G6077
AMCG00004152 mRNA downstream 24104 35476558 ~ 35495919 (-) True AMCG00004152
AMCG00004148 mRNA downstream 96793 35419864 ~ 35423230 (-) True AMCG00004148
AMCG00004146 mRNA downstream 106275 35407247 ~ 35413748 (-) True AMCG00004146
AMCG00004147 mRNA downstream 125687 35392028 ~ 35394336 (-) True AMCG00004147
AMCG00004144 mRNA downstream 144861 35374824 ~ 35375162 (-) True AMCG00004144
AMCG00004154 mRNA upstream 111257 35642527 ~ 35643105 (-) True AMCG00004154
AMCG00004156 mRNA upstream 153985 35685255 ~ 35691933 (-) True AMCG00004156
AMCG00004155 mRNA upstream 165352 35696622 ~ 35720187 (-) True AMCG00004155
AMCG00004162 mRNA upstream 636031 36167301 ~ 36172699 (-) True AMCG00004162
AMCG00004169 mRNA upstream 746688 36277958 ~ 36285408 (-) True AMCG00004169
TU7345 other downstream 105577 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 556184 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 627410 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 1384423 34132098 ~ 34135600 (-) True G5801
TU6815 other downstream 2923616 32593627 ~ 32596407 (-) True G5566
TU7893 other upstream 1836715 37367985 ~ 37368822 (-) True G6441
TU8320 other upstream 4310665 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 6845456 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 8989644 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 10775656 46306926 ~ 46307319 (-) True G7868

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000310_01533834_01553414.mRNA True 2863 mRNA 0.50 3 CI01000310 1532968 ~ 1553665 (-)