RNA id: AMCG00004154


Basic Information

Item Value
RNA id AMCG00004154
length 579
RNA type mRNA
GC content 0.62
exon number 1
gene id AMCG00004154
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35642527 ~ 35643105 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCGAAATCTGATGGCGTGGGGGTCGTTACCGGTTTCGCCCAACTGCACAACCTGGACGAAACGGTGGGGAACGGCGAAGGGGATCCCGGGGAGAGCAGCTCCATTCACATCTGTCATTGCTGCAACACCTCGTCGTGCTATTGGGGCTGCCGGAGCGCCTGCCTGCGCTCTCTCCTGGGGAAGGGGAAAGAAGCCAGGCGGCCGCCGCCGCAGGAGGAGCGCCTGTGGCTGGACTGCCTGTGGATCGTCCTGGCGCTGTTGGTCTTCTTTTGGGACGTGGGCACGGACCTGTGGCTAGCCGTCGACTACTACTCCAAGCGGGACTACCTTTGGTTTGGGTTGACCCTGTTCTTCGTGCTCGTCCCGTCGGTGCTGGTCCAGATCCTGAGCTTCAGGTGGTTCGTGCAGGATTACACCGGGGGAGGTCTGGGGGCGGTGGAGGGGCTCAGTAGTCGGAGAGCCGCGGCGGGCTTGAGTGCTGGCATCCACGGCAGGGACAGGTGCTGTCAGATCTCCGTGTGGATCTGGCAGTCTGTCATACACATCCTGCAGATGGGACAAGTATGGAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7385 lncRNA downstream 167186 35472868 ~ 35475341 (-) True G6009
TU7335 lncRNA downstream 294260 35345118 ~ 35348267 (-) False AMCG00004143
TU7287 lncRNA downstream 735554 34903366 ~ 34906973 (-) True G5929
TU7222 lncRNA downstream 744620 34872613 ~ 34897907 (-) True G5869
TU7408 lncRNA upstream 24932 35668037 ~ 35668538 (-) True G6030
TU7412 lncRNA upstream 29346 35672451 ~ 35672679 (-) True G6034
TU7415 lncRNA upstream 30841 35673946 ~ 35676120 (-) True G6037
TU7449 lncRNA upstream 177153 35820258 ~ 35820483 (-) True G6068
TU7459 lncRNA upstream 336334 35979439 ~ 35979839 (-) True G6077
AMCG00004153 mRNA downstream 111257 35520023 ~ 35531270 (-) True AMCG00004153
AMCG00004152 mRNA downstream 146608 35476558 ~ 35495919 (-) True AMCG00004152
AMCG00004148 mRNA downstream 219297 35419864 ~ 35423230 (-) True AMCG00004148
AMCG00004146 mRNA downstream 228779 35407247 ~ 35413748 (-) True AMCG00004146
AMCG00004147 mRNA downstream 248191 35392028 ~ 35394336 (-) True AMCG00004147
AMCG00004156 mRNA upstream 42150 35685255 ~ 35691933 (-) True AMCG00004156
AMCG00004155 mRNA upstream 53517 35696622 ~ 35720187 (-) True AMCG00004155
AMCG00004162 mRNA upstream 524196 36167301 ~ 36172699 (-) True AMCG00004162
AMCG00004169 mRNA upstream 634853 36277958 ~ 36285408 (-) True AMCG00004169
AMCG00004168 mRNA upstream 645290 36288395 ~ 36300239 (-) True AMCG00004168
TU7345 other downstream 228081 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 678688 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 749914 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 1506927 34132098 ~ 34135600 (-) True G5801
TU6815 other downstream 3046120 32593627 ~ 32596407 (-) True G5566
TU7893 other upstream 1724880 37367985 ~ 37368822 (-) True G6441
TU8320 other upstream 4198830 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 6733621 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 8877809 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 10663821 46306926 ~ 46307319 (-) True G7868

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035497 True 2565 mRNA 0.52 3 NC_007131.7 18801525 ~ 18915376 (-)
grasscarp (Ctenopharyngodon idella) CI01000051_00414617_00476423.mRNA True 1743 mRNA 0.60 3 CI01000051 414617 ~ 476423 (+)