RNA id: AMCG00004155


Basic Information

Item Value
RNA id AMCG00004155
length 3918
RNA type mRNA
GC content 0.40
exon number 7
gene id AMCG00004155
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35696622 ~ 35720187 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTTAAACATCTTTTTGTCACTTTTTCACAGTCTCAAGATCCCAAGTGTCATCAGAGAAGCAGGGAGCACTGACAGAGAATGTGACATACTTGAATGAGAGGTTTCAAGATGTGCAGCTGTCAATGAACCAACTTTCCACCAAGAATGATGTACTTGAGAACATCTGGAAACTGGAGAACCTCTTCCAGAACCACTCCCAGACTTTGCTGCAGCTCAGCCAAGCTGTACGCAGACTGGAGCGAGATGTTCAGGGCCTACAGTTGCAAACAAACCAGACCGCCGGGTTTGTGTCTCAGCTGGGGGAGGTCTTCAGGGGGCTGAGCTTTGCCAGCCACAGAAATATGAGCGATCTCAGCACTGACTTGGGAAGAGCCAAGCTCTCTTTGCAAAAACAGGACATGCTGCTGAAAGAGACAGCCGATCAAGTGGACAGCCTCAAAGACAAGTTAGATCAGATGGGCAGGACTGTGGGCATGGTCAACAGAACAGTCGGGAGTGACATCAGTCTTCATCACAGCAAAATTCAGGACCTGCAAATACAGATCACCAACATCACACAGGACACTAGGACAATAAGGGTGACACAGATAAACATggagcagctgttgagaaatgAGGTTGCCGTCCTGAGTAATATCACAGAGGATCTGAGGCTTAAGGACTGGGAGCAGTCTGTGGCTCTGAAGAACATCACTCTGATAGAAGGCCCTCCTGGACCAAAGGGTGAAAAGGGAGACAGTGGACTCTCAGGGACACCTGGTATACCAGGTCTAACAGGAATAAGAGgaattCCTGGAGAGCAAGGCATCCAGGGTCCCAGGGGGCTGAGAGGAGTAGCTGGGGTGGACGGTGCAGCTGGGCAGAAAGGGGAACTTGGACTTAAAGGTGACAGAGGTGAAAAGGGACAAAAGGGTGACAAAGGAGATAAAGGCTATAAAGGCGACAAAGGAGACAATGGCGATGAGACAGGTACAGTGGTACAGCCACTGGTCCGGCTGGTGAACGGGTCAGGCCCACATGAGGGCCGCGTGGAGGTGTACCACGAGAAGCGCTGGGGCACAATCTGTGATGACGTCTGGGATAAAAAGGATGGAGACGTTGACCTCTATGATATCTGCAGAGGAGGTTCTGACCTTATATGGATGGATGATGTTGCTTGTGCAGGAACAGAAGACACCATCCAAGAGTGCAATTTTTCTGGCTGGGGAAAGACCAACTGTGGGCATGTGGAGGATGCTGGAGTTACCTGCATCCCTTAATGAACAGACATCAGACAGCTACCAACAATAATTAACTAAAATGATCATCAACACTGTCACAAAAGATGCTGGTTATCTGTGAGAAACAGCATAGAAAAAGGAGATTACAAGTAGAAAATGCCACACACTTATTTATGCCCATGGCATTTATGCATTTGCTTCCCTGAGAAATATCAGTTTGTCTGTAattctttttacttttctttcagTAGCCAGTGGTTTAGCATTAgttaattataatgattagAGGGTTTCTGGATAGTTATAATGTCTTTCTCTtaccaatacattttaatttcattagaCCATTGCCAATGATGCCAGTCTCTCCATTGACAATAGTGTTGATGGTATTTCAATGGTTTGAGaacagattatttttcaaatggaaaaaatgaatcCAGCAATGAATAGAACAAATTAGATGTAACTGCTTTTTTTagtacagaatataaataagGAAAACAGGATCTACATCAAATGGCAGCACAgtttgtactgtatgtgttaTTGGTTACACCCTAAAAGAGTAGACTATGTACCAGTAGTTAAACCCTAAAACATTTATGTTTCTTGTATTGTTATGTGACATACTTATTACTTCCCTATGTATTCTGACTTAATAACATGCAATCAGAACTACCAGAAAATTGTCACTGTGTCGTTTACATATCAAGACAACAAGGAATTATTAGAAAGGTCTGAATGTGGTATAGATTTACTTTTGcccaaaatatgcatttcattaacaCCATAACACAGCAAATCCTCCCCAACGGTTTGAGGACTTCTTCCTGGAATGGGAAATTCAATAGGCTAAATGATGGAGGAATTTCAGTTCACACCCACACGTTCTAATATTTTTAGATTCATGAATGaaaattgattttcattttacgAAATAAGGATGTTAACGGAAACTAAAGCTGCCACTTGTACTGCCTTCTggtgtgtatttttgttcttaattattCCTCACTATTTAGATTTTTCCAGTAAATAAAAGACTGTATGCTGTGCTCCAGGGtgcacagtcaagggccaaagaaaacacattttggttttattaccAATTCCATTTTAATGCTTTGTTGTTTCCTCCTCGTTGTCGTTGTCTCCTttctttattatgattttgatCAATTTCACCCAGTATTTTCATCATACATTTTATGCTAGccttcttattttttattgatgaaaataatattcttgTAGAAAATATGTACACTAGTACTCTActaatatactgtgtgtgtgcgtgtgtgtgtatatagatgcTGCCCTGCTTACGCAATCCTTCCATTCCGGAAAGCCTTACGTAAGTCTGAAAcgtatatatgtacagtatgtgtttttgtgtgtgtggttatgtaaatgaatgtatgtgtgtatggtACAGCCCAGCATGTATGTTTATACTGTTGAGGTAGTCAAACTGAGTTCACGAGCAATTGACGACAGGCTTTGTCCGCCTTCATACTTTTTcactattttcattttctgcttaAATCAGTGTTCTTTCACTGACAAACTGGTCCTGCACTCTTACTATGACTTGGTTGCTTTCCAGTCATGATTTGGATGAAATAACAGAAATTCAGTATCACAGAAATAATGCCGTTGTATTCCTCTGCATAGTGAACTACTTTGCCTTTCCATACACTACGCAATCTTTTCTGCAACTCAAAAATGCTAGTTATGCCTTATGGAATGGTTTGTATAAGGTAACACTGTGGGGGGTTGCTACAGTGCTGGGCTCTTGAAATAAGCAGGGCCTCGGGAGCAGACACAGCAAAGGTGCAAAGATGAGGAATTATTTACAGTGcagttctgaaaacaaaataaaactgaaccCTAGCTCCTTGTTGATCTTAACTACACAGTGGAAAAAGGTGCCTCTGTAAACACTTAGCTAATCAAAAGACAGAGAAATAGCAAATAGTTCAAATCAGTATCCAAAAGTTTATAAGCAAAGTGCTTTACTGGTGttctgttgttcttgttttcaccCACCcactcactgactcactgactcactgactgactcactctctcactctctctctcactcactcactcactcactatctgtctcactcactcactaGCTAACTCTTACATCCCACACTTCCTGCAGGCACCGGCCAATAAAAGGAGTTCTGCTGGTCAGGTGTTCCAGTACTGTGATTCACCCTCCCAGGGCTGTTACTGTTATATAATCTGTTGTTTAAGAAATATCCAGTTAACGCCAAACACTTGCATATAGGGAACTGCATGCAAGTTCtaattctgttgttgtttctcaAAGGTTTTATTAATACGTTTCTTGAATCTTGTGAAATTGAGTTATTCCAAAACTATTTTTATGCAGTAGTTTTTCAGACTCGGAGAATTACATCCTTTAAAATCTTTCCATAGGCTACACCATGGACcattgggtttttgttttgtttttgtttttactaccTAAACTGATTATATCTGATGTAactatataaaattgtatttttatattgagaGTTCTGTATGTGTTACaacaaaagggaaagaaaaaaataaaatctgtggtATAAAGCATATGTTCCAAATGTTGACGTTTAGAATAGATTGTACTatgggaaattaaaacatgccTTTGTTTACATTCTCGTTTG

Function

GO: NA

KEGG:

id description
ko05014 Amyotrophic lateral sclerosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7415 lncRNA downstream 20502 35673946 ~ 35676120 (-) True G6037
TU7412 lncRNA downstream 23943 35672451 ~ 35672679 (-) True G6034
TU7408 lncRNA downstream 28084 35668037 ~ 35668538 (-) True G6030
TU7385 lncRNA downstream 221281 35472868 ~ 35475341 (-) True G6009
TU7335 lncRNA downstream 348355 35345118 ~ 35348267 (-) False AMCG00004143
TU7449 lncRNA upstream 100071 35820258 ~ 35820483 (-) True G6068
TU7459 lncRNA upstream 259252 35979439 ~ 35979839 (-) True G6077
TU7488 lncRNA upstream 441460 36161647 ~ 36163434 (-) True G6103
TU7516 lncRNA upstream 536802 36256989 ~ 36257189 (-) True G6129
TU7523 lncRNA upstream 548927 36269114 ~ 36270818 (-) True G6136
AMCG00004156 mRNA downstream 4689 35685255 ~ 35691933 (-) True AMCG00004156
AMCG00004154 mRNA downstream 53517 35642527 ~ 35643105 (-) True AMCG00004154
AMCG00004153 mRNA downstream 165352 35520023 ~ 35531270 (-) True AMCG00004153
AMCG00004152 mRNA downstream 200703 35476558 ~ 35495919 (-) True AMCG00004152
AMCG00004148 mRNA downstream 273392 35419864 ~ 35423230 (-) True AMCG00004148
AMCG00004162 mRNA upstream 447114 36167301 ~ 36172699 (-) True AMCG00004162
AMCG00004169 mRNA upstream 557771 36277958 ~ 36285408 (-) True AMCG00004169
AMCG00004168 mRNA upstream 568208 36288395 ~ 36300239 (-) True AMCG00004168
AMCG00004172 mRNA upstream 592734 36312921 ~ 36339478 (-) True AMCG00004172
AMCG00004171 mRNA upstream 619987 36340174 ~ 36344689 (-) True AMCG00004171
TU7345 other downstream 282176 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 732783 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 804009 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 1561022 34132098 ~ 34135600 (-) True G5801
TU6815 other downstream 3100215 32593627 ~ 32596407 (-) True G5566
TU7893 other upstream 1647798 37367985 ~ 37368822 (-) True G6441
TU8320 other upstream 4121748 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 6656539 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 8800727 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 10586739 46306926 ~ 46307319 (-) True G7868

Expression Profile