RNA id: AMCG00004160



Basic Information


Item Value
RNA id AMCG00004160
length 480
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00004160
representative False

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36027279 ~ 36045282 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCCGCCTGTATTCCAGTTTTACTCAGCAATGGCTGGGAGCTGCCGTTTTCTGAGATCATTGACTGGAGCAAAGCAGCTGTCATTGGAGATGAGAGACTTTTACTACAGatTCCTTCAATAACCAGATCTGTGGACCATGACAAAATATTGGCACTCAGGCAGCAGACTCAGTTCCTTTGGGATGCCTATTTTTCTTCGGTAGCAAAAATAGTATTAACTACATTAGAGATAATCCACGATCGAATCCATTCACACATagcaagaaataaaattatgtgGAATTCCCTGCCAGGTGGTCTGTACATTTTACCACAGTTTTCTACCAATTCGGAAgactttccattttattattcattgctCGGAAAAAGTCCATCCCAGGAGTTCACAGCTGTAATACAGGCTGTTACCCCTTTCCAGTCACAGTCGCAGCCCATTGTCAAACTGATAATTGCTGTTGCCAAATCCAAGTACTGCGCACAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU7448 lncRNA upstream 206798 35820255 ~ 35820483 (+) True G6067
TU7383 lncRNA upstream 560626 35465862 ~ 35466655 (+) True G6007
TU7378 lncRNA upstream 571394 35455676 ~ 35455887 (+) True G6002
TU7229 lncRNA upstream 677254 34899636 ~ 35350027 (+) True G5875
TU7487 lncRNA downstream 116324 36161606 ~ 36165870 (+) True G6102
TU7620 lncRNA downstream 450558 36495840 ~ 36520594 (+) True G6224
TU7622 lncRNA downstream 481386 36526668 ~ 36539067 (+) True G6225
TU7638 lncRNA downstream 508622 36553904 ~ 36555108 (+) True G6240
TU7640 lncRNA downstream 510824 36556106 ~ 36557331 (+) True G6242
AMCG00004163 mRNA upstream 189571 35835773 ~ 35837710 (+) True AMCG00004163
AMCG00004158 mRNA upstream 261101 35752450 ~ 35766180 (+) False AMCG00004158
AMCG00004157 mRNA upstream 342888 35642996 ~ 35684393 (+) True AMCG00004157
AMCG00004151 mRNA upstream 568498 35457154 ~ 35458783 (+) True AMCG00004151
AMCG00004150 mRNA upstream 571759 35451071 ~ 35455522 (+) True AMCG00004150
AMCG00004161 mRNA downstream 22298 36067580 ~ 36073621 (+) True AMCG00004161
AMCG00004159 mRNA downstream 69219 36114501 ~ 36128960 (+) True AMCG00004159
AMCG00004165 mRNA downstream 88724 36134006 ~ 36158549 (+) True AMCG00004165
AMCG00004164 mRNA downstream 142211 36187493 ~ 36211948 (+) True AMCG00004164
AMCG00004166 mRNA downstream 192524 36237806 ~ 36252898 (+) True AMCG00004166
TU7437 other upstream 261101 35752533 ~ 35766180 (+) True AMCG00004158
TU7209 other upstream 1156961 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 2896095 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 5132454 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 5755757 30271210 ~ 30271524 (+) True G5245
TU7524 other downstream 226910 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 728719 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 816265 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 954075 36999357 ~ 37000158 (+) True G6369
TU8679 other downstream 5414294 41459576 ~ 41507231 (+) True G7094

Expression Profile