RNA id: AMCG00004173


Basic Information

Item Value
RNA id AMCG00004173
length 398
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00004173
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36454991 ~ 36469024 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAGCACCATTTTAACGGAAATAAGACGGTACCACCATTCCCCGAGGGACTACAGATGGCCATATTTGgcatgGGCTGTTTCTGGGGAGCTGAGAGGAAATTCTGGCAGCAGAAAGGAGTTTATTCCACCCATGTGGGCTATGCTGGTGGACTAACTCCGAATCCATCCTATGAGGAAGTGTGCACAGgTAAAACTGGCCATGCCGAGGTTGTTCGAGTTGTGTTTGCACCTGGAAAGACAAGCTTTGATAAACTGTTGAAGGTGTTTTGGGAGAACCATAATCCCACACAAGGGATGCGACAGGGCAACGATGTCGGAACCTCATATCGTTCTGCTGTCTACACTTACTCGCAGGAGCAAATGGACACAGTCCTCAGATCTAAGGAGGAATACCAG

Function

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030091 protein repair biological_process
GO:0008113 peptide-methionine (S)-S-oxide reductase activity molecular_function

KEGG:

id description
K07304 msrA; peptide-methionine (S)-S-oxide reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7487 lncRNA upstream 289121 36161606 ~ 36165870 (+) True G6102
TU7461 lncRNA upstream 409709 36027279 ~ 36045282 (+) True AMCG00004160
TU7448 lncRNA upstream 634508 35820255 ~ 35820483 (+) True G6067
TU7383 lncRNA upstream 988336 35465862 ~ 35466655 (+) True G6007
TU7378 lncRNA upstream 999104 35455676 ~ 35455887 (+) True G6002
TU7620 lncRNA downstream 26816 36495840 ~ 36520594 (+) True G6224
TU7622 lncRNA downstream 57644 36526668 ~ 36539067 (+) True G6225
TU7638 lncRNA downstream 84880 36553904 ~ 36555108 (+) True G6240
TU7640 lncRNA downstream 87082 36556106 ~ 36557331 (+) True G6242
TU7645 lncRNA downstream 96546 36565570 ~ 36593153 (+) True G6247
AMCG00004170 mRNA upstream 64479 36348573 ~ 36390512 (+) True AMCG00004170
AMCG00004167 mRNA upstream 176757 36261788 ~ 36278234 (+) True AMCG00004167
AMCG00004166 mRNA upstream 202093 36237806 ~ 36252898 (+) True AMCG00004166
AMCG00004164 mRNA upstream 243043 36187493 ~ 36211948 (+) True AMCG00004164
AMCG00004165 mRNA upstream 296442 36134006 ~ 36158549 (+) True AMCG00004165
AMCG00004174 mRNA downstream 32802 36501826 ~ 36502116 (+) True AMCG00004174
AMCG00004176 mRNA downstream 194778 36663802 ~ 36669648 (+) True AMCG00004176
AMCG00004179 mRNA downstream 220356 36689380 ~ 36690284 (+) False AMCG00004179
AMCG00004180 mRNA downstream 273603 36742627 ~ 36746065 (+) True AMCG00004180
AMCG00004186 mRNA downstream 279832 36748856 ~ 36765206 (+) True AMCG00004186
TU7524 other upstream 180061 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 688811 35752533 ~ 35766180 (+) True AMCG00004158
TU7209 other upstream 1584671 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 3323805 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 5560164 30887995 ~ 30894827 (+) True AMCG00004056
TU7741 other downstream 304977 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 392523 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 530333 36999357 ~ 37000158 (+) True G6369
TU8679 other downstream 4990552 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 5743486 42212510 ~ 42216362 (+) False AMCG00004304

Expression Profile