RNA id: AMCG00004176


Basic Information

Item Value
RNA id AMCG00004176
length 1663
RNA type mRNA
GC content 0.48
exon number 9
gene id AMCG00004176
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36663802 ~ 36669648 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGTGCCTTTTAAACTACAACTTCTACGACAGCACTTCCTGGTCGTGAAACGCACTGCATGCCCGGGGATGTAAAGGTCAGTGCCAGTTAAGGTTCTGTGCGGTTAAGCATGCAGAGGCAGACggtaaatgtgttgtttctgcAGCACAAGGAGGGCTCGGACAGCATTTGTGTCTTCGTTGTCAAAGCCTGGTCTGATCGGAGCGATTGCGCGCAGTGTGTGCTGAGCGAGTTGCAGACGCTGCGGGTTTCTGCTGGACTTACATTGCAATGGTGCTGTCAACTGAAGCAGAAGAGTCACGTCTTACCGCTAAGTGGCCTCGGATGACAACGTTCATTTTGTCTGGTGTTGCGGCTTCTGTGGCTGAAATAGTTACTTTCCCACTTGACCTGACCAAGACACGGCTGCAGATCCAAGGCGAGGCTGCGCTCCGTCATCATGGGGACGGGGGTGGCAGGATGGCGTCGCACCGGGGCATGTTCCGCACGGCGGTGGGGATCGTAGGAGAAGAAGGCCTGCTGAAACTGTGGCAGGGTGCCACTCCTGCCATCTACAGACACATAGTGTATTCTGGCGTCCGGATGGTTGCATATGAGCACATTCGAGACTCAGTGCTGGGCAGAAATGAAGATGCCAGCTTTCCACTTTGGAAAGCTGTGCTGGGAAGCATGATGGCTGGGGCCATTGGGCAGTTTGTCGCCAGCCCCACAGACCTGGTAAAGGTGCAGATGCAGATGGAGGGGCGACGCAGACTGGAGGGCAAACCACCCCGAGTATGTGGAGTTCCCCACGCTTTTATGAAAATCATTACGGAGGGAGGAATTCGTGGGCTGTGGGCAGGATGGGTGCCAAACGTACAGAGGGCAGCTCTCGTAAATTTAGGAGATCTTGCTACCTATGACACCGTAAAGCACTTTCTACTGAGAAATACAGCCCTAGATGACAGCTGCCTGTGTCACGGATTGTCAAGCATATGTTCAGGACTGGTCGCAGctacattgggaacccctgctgaTGTCATTAAAACTCGAATCATGAACCAGCCTAGAGACTTTCATGGCAGGGGTTTATTGTACAGATCTTCTGTTGACTGCCTCATACAGTCAGTGAGAGGGGAGGGATTTATGTCTTTGTACAAAGGCTTCCTGCCAACCTGGATGAGAAtggcCCCCTGGTCCATGACATTCTGGCTCACATTTGAGCAAATCAGAAGAAGGACTGGCGTCACCTCCTTTTAGATTCTAGTTTTGTATTGGGAACGCTGTGGTTTTGCATTAAGCTTTAACTTTACCACAGGCACTTCCACaattcttgtgttttttatgcTGCTGTTTCactgaaatggaaagaaagagaaacaccTTTGAAACAGGTCAATCAGTACTGTACACCAGCCCAGCAACCCAGTGTGTcacatttatgtatacattgattccacccccccacctcatATGCTTAGTGTCTCTACATCTAGCATTCCTTGGTGTTCTGcagttatatattgtattgtacatttacCGTTCAGTGCCTGTTCTCTGCAAGTAatttaatatgtgttttctgcagtttttttaatttattttactatttcaACATATTATAAGTTGTATTTATGTACACTAGCAATctttgtatataataaaatattaaatatgtcagAG

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15112 SLC25A27, UCP4; solute carrier family 25 (mitochondrial uncoupling protein), member 27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7650 lncRNA upstream 20100 36639660 ~ 36643702 (+) True G6252
TU7645 lncRNA upstream 70649 36565570 ~ 36593153 (+) True G6247
TU7640 lncRNA upstream 106471 36556106 ~ 36557331 (+) True G6242
TU7638 lncRNA upstream 108694 36553904 ~ 36555108 (+) True G6240
TU7622 lncRNA upstream 124735 36526668 ~ 36539067 (+) True G6225
TU7678 lncRNA downstream 17982 36687630 ~ 36697885 (+) False AMCG00004179
TU7672 lncRNA downstream 19734 36689382 ~ 36690702 (+) False AMCG00004179
TU7673 lncRNA downstream 19734 36689382 ~ 36697885 (+) True AMCG00004179
TU7677 lncRNA downstream 19734 36689382 ~ 36691243 (+) False AMCG00004179
TU7680 lncRNA downstream 28448 36698096 ~ 36698298 (+) True G6271
AMCG00004174 mRNA upstream 161686 36501826 ~ 36502116 (+) True AMCG00004174
AMCG00004173 mRNA upstream 194778 36454991 ~ 36469024 (+) True AMCG00004173
AMCG00004170 mRNA upstream 273290 36348573 ~ 36390512 (+) True AMCG00004170
AMCG00004167 mRNA upstream 385568 36261788 ~ 36278234 (+) True AMCG00004167
AMCG00004166 mRNA upstream 410904 36237806 ~ 36252898 (+) True AMCG00004166
AMCG00004179 mRNA downstream 19732 36689380 ~ 36690284 (+) False AMCG00004179
AMCG00004180 mRNA downstream 72979 36742627 ~ 36746065 (+) True AMCG00004180
AMCG00004186 mRNA downstream 79208 36748856 ~ 36765206 (+) True AMCG00004186
AMCG00004187 mRNA downstream 120786 36790434 ~ 36873869 (+) True AMCG00004187
AMCG00004192 mRNA downstream 214710 36884358 ~ 36904094 (+) True AMCG00004192
TU7524 other upstream 388872 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 897622 35752533 ~ 35766180 (+) True AMCG00004158
TU7209 other upstream 1793482 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 3532616 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 5768975 30887995 ~ 30894827 (+) True AMCG00004056
TU7741 other downstream 104353 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 191899 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 329709 36999357 ~ 37000158 (+) True G6369
TU8679 other downstream 4789928 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 5542862 42212510 ~ 42216362 (+) False AMCG00004304

Expression Profile