RNA id: TU7751


Basic Information

Item Value
RNA id TU7751
length 1561
lncRNA type sense_over
GC content 0.42
exon number 3
gene id AMCG00004188
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36783743 ~ 36787122 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACATGCGAGCCGACAGAGCCAGCAGGCCCAGTAGGGCACCAGGCAGTATGGAGCAATGCGATTGGCCGCCCCTGAACTCCACCAATCATGCGGGAGATTGTTAGGTTGAATTGCGTCcatctttttttgcttttactgCTGATGTGTGTTTAACAATCTCAGTCGCAGAGGCATTGTATTCTGcttattctttttatttctttcggATTGCCTTTAGTGATGCCTTATTATCAGACCTGGGAAGAGTTTGCCAGAGCGGCAGAGAAACTTTATTTGACAGATCCAATGAAGGTGCGAGTAGTACTCAAATATCGACACTGTGATGGTAACCTATGTATGAAAGTGACTGATGATGCAGTGtgttTGCAGTACAAGACAGACCAAGCCCAGGACGTCAAGAAGATCGAGAAGTTGCACGGAAAACTGATGAGATTCATGGTCTCTAAGGAATCCCGCAGTGTTTCCATGGAAACAGACTGAGCACTTGATTCTGTGTTCTATCCAAAATTTGGACAGTGTCTTCAACACAAAATGAGAGGACTGGGAAACGAGAGACTTTTTGAGGAGGATGTCTGTATAGCAGCGCAGGGGTCTGAAGGGGGGgtgcattacaaatattacaaatttgGACAAGGACTATGGCTCCTTGGCAGTCTTGGAGGAAGTCTGCCTGTGGCTCCTGTAGAAagccagtatttattttttttaggttaAGGTGGAATAAAAACTAAGGCTGCACAACAGCAGTTTGGAATTATGAAGAAATTATGAATTCATGTTTAGAATTTTGgtactttctttatttttttttcctctccccccttccctctcaGAAAGGAGTAATGTATGCCTtcatcacacacatttcaagatTGAGTCTTTCCCCTGCAACTTAACCTTCTGGTCTCCTCTGCAGTACAGTCTACCCACAGAGGCATTGCTTTTCATCAAAATACACTCTTAATCTCACACGGAATTGTaggaatgtttattttctgtaacacTTGCCTGGATTTATTAATCCATTCATGATTGATCAATACATTAAATCTTATTTCTTCCTCTAGTATTTTAGTTCCTGCCCCCCCTGCTTTGTCTCACGTTACCTCTGCCTGTTATGTACTGATTCTTTACTGTACAGTAAAATATCCCATCTGCAACTCTTAAGATCTCCATCAAAATAGTGTTACTGGTGCCACAGTTAGTGATGGTGATCTTCAACATCCTTTCAGTCTTACCTCTGGTAATATGAATGCAGGTTAGAATTTACTATTGTTATTCTCCTTTCTTCCCTGCAGTTCAGTGAGGAATGGAAATGTATGTAAGCAAGACAGAGAAGGGGTTAATTGAATCtagctgccaccaccatgagtCCCACTCAATGTCTATAGACTCGGATACATCAGCACATCTCATGCAGATAAAATCGCACTGTTAATGGTTGAAGAAGTCCAGTGCCTTTTTACATTGCATTATAAACTATAAACACATTCACCACACCCCTTCAGGGGCTCAGATTGGTAATGGGAGTAATTCCTTTTGAAACACCACtcaagtgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7753 lncRNA downstream 3052 36780478 ~ 36780691 (-) True G6326
TU7752 lncRNA downstream 11642 36770732 ~ 36772101 (-) False AMCG00004189
TU7736 lncRNA downstream 17934 36765572 ~ 36765809 (-) True G6309
TU7641 lncRNA downstream 226412 36556106 ~ 36557331 (-) True G6243
TU7639 lncRNA downstream 228635 36553907 ~ 36555108 (-) True G6241
TU7807 lncRNA upstream 125116 36912238 ~ 36920856 (-) True G6374
TU7821 lncRNA upstream 240906 37028028 ~ 37028244 (-) True G6384
TU7888 lncRNA upstream 528514 37315636 ~ 37318149 (-) True G6437
TU7887 lncRNA upstream 528555 37315677 ~ 37318149 (-) False G6437
TU7892 lncRNA upstream 562704 37349826 ~ 37381953 (-) False AMCG00004203
AMCG00004189 mRNA downstream 4681 36769048 ~ 36779062 (-) True AMCG00004189
AMCG00004184 mRNA downstream 62257 36697723 ~ 36721486 (-) True AMCG00004184
AMCG00004182 mRNA downstream 92382 36685290 ~ 36691361 (-) True AMCG00004182
AMCG00004183 mRNA downstream 102284 36677777 ~ 36681459 (-) True AMCG00004183
AMCG00004181 mRNA downstream 106614 36670315 ~ 36677129 (-) True AMCG00004181
AMCG00004194 mRNA upstream 133943 36921065 ~ 36960702 (-) True AMCG00004194
AMCG00004195 mRNA upstream 184269 36971391 ~ 37005951 (-) True AMCG00004195
AMCG00004196 mRNA upstream 262879 37050001 ~ 37052773 (-) True AMCG00004196
AMCG00004204 mRNA upstream 491264 37278386 ~ 37288335 (-) True AMCG00004204
AMCG00004203 mRNA upstream 536888 37324010 ~ 37350045 (-) True AMCG00004203
TU7345 other downstream 1369297 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 1819904 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 1891130 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 2648143 34132098 ~ 34135600 (-) True G5801
TU6815 other downstream 4187336 32593627 ~ 32596407 (-) True G5566
TU7893 other upstream 580863 37367985 ~ 37368822 (-) True G6441
TU8320 other upstream 3054813 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 5589604 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 7733792 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 9519804 46306926 ~ 46307319 (-) True G7868

Expression Profile