RNA id: TU7752


Basic Information

Item Value
RNA id TU7752
length 1176
lncRNA type sense_over
GC content 0.44
exon number 2
gene id AMCG00004189
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36769048 ~ 36779062 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attgggtgtttgttttttcatcgcTACTGGCTATTCTTCTGAAAACTGATCCCACATCCTTTTGCACTTCCTTAAGGTGCACTCCAGGTGCGATGTGCAGCACAGAGTGAGCCGGCCGCAGCCCTGTCCCGAGTATGCAGCCCGGGAGCGGAGCAGAGTGAGGAGCCTGCGCCAGGCCTTCCACAGCCTGCAGGCTGCCCTGCCCTCCGTCCCTCCCAACACCAAGCTCTCCAAGCTGGACGTCCTGGTGCTGGCCACCAACTACATTGCCCACTTGACTCAGACTCTGGACCAGGACAGCACACAGCCTGACCACCAGGTGACCCTGACAGCACAAGGATACCTGCATCCAGTCAAGAAGTGGCCCATGAGGTCCCTCCTATACTGTGGTAGCATGGGAGAGTTGTTGACGGGGGTCCCGGCAAATCAGAAGGATGTGTGTGCTGAGGAAGATGCTCATTTATTGTCCCACAACCCTGGGTCCCGCCTTGTGTGAGACTTCAGCAGTCTGCTATGGGACTGTCTGGCTCTGAGAAAGAATCCTTTGTATTATAAGTGTAGGACTTCCACATCATTTAACTTGTTTGGAGTACAGAAAGGACTGTGTCAATGCTACAGTTAAAGTATTGTGTATTAACAtctgctgctttaaaaaaaacctatgtaataaacacatatttaaaccCCCTCCccacatacatgcatattcaaagttaaacaaaactaaaaaaataaataaataatacatgtttttctgtcttCTACACTTCTAATCTGCAGTAAGGGCAGATTGTGCTTGTGTTGTTCGGTTCTGTGGTTTTGAGTTGACAGTCATAAATCTGGGAAAAGATAAATACTTGGGGAGGTTTGTCATGTGTACTTTTGGCACACTCTTTTGTCTGTAATAAGCTATCATGTACAAGGTTGTAGAACTCTGtttaatatgttgttgttgtctgttcCACCCCTGCCTTTTTGGACAAATATATGCACTTACCTACTAACAGGATCTAGTCAAATTCCAGGACAGCTGGAAAAACATTATGCAGTTCttcaaacattcattttttttgtttcttctctgaACAAATGTCATTCGTCAAGAAAGTTATGTTAATTCACTGTTTTGTGAAAACAGCCTGTGTAAATATTTCCATTCTGGAATTATACATCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7736 lncRNA downstream 4923 36765572 ~ 36765809 (-) True G6309
TU7641 lncRNA downstream 213401 36556106 ~ 36557331 (-) True G6243
TU7639 lncRNA downstream 215624 36553907 ~ 36555108 (-) True G6241
TU7632 lncRNA downstream 229891 36495772 ~ 36540841 (-) False AMCG00004178
TU7596 lncRNA downstream 367346 36402392 ~ 36403386 (-) True G6200
TU7753 lncRNA upstream 8377 36780478 ~ 36780691 (-) True G6326
TU7751 lncRNA upstream 11642 36783743 ~ 36787122 (-) True AMCG00004188
TU7807 lncRNA upstream 140137 36912238 ~ 36920856 (-) True G6374
TU7821 lncRNA upstream 255927 37028028 ~ 37028244 (-) True G6384
TU7888 lncRNA upstream 543535 37315636 ~ 37318149 (-) True G6437
AMCG00004184 mRNA downstream 49246 36697723 ~ 36721486 (-) True AMCG00004184
AMCG00004182 mRNA downstream 79371 36685290 ~ 36691361 (-) True AMCG00004182
AMCG00004183 mRNA downstream 89273 36677777 ~ 36681459 (-) True AMCG00004183
AMCG00004181 mRNA downstream 93603 36670315 ~ 36677129 (-) True AMCG00004181
AMCG00004185 mRNA downstream 107063 36646013 ~ 36663669 (-) True AMCG00004185
AMCG00004188 mRNA upstream 12722 36784823 ~ 36786902 (-) False AMCG00004188
AMCG00004194 mRNA upstream 148964 36921065 ~ 36960702 (-) True AMCG00004194
AMCG00004195 mRNA upstream 199290 36971391 ~ 37005951 (-) True AMCG00004195
AMCG00004196 mRNA upstream 277900 37050001 ~ 37052773 (-) True AMCG00004196
AMCG00004204 mRNA upstream 506285 37278386 ~ 37288335 (-) True AMCG00004204
TU7345 other downstream 1356286 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 1806893 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 1878119 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 2635132 34132098 ~ 34135600 (-) True G5801
TU6815 other downstream 4174325 32593627 ~ 32596407 (-) True G5566
TU7893 other upstream 595884 37367985 ~ 37368822 (-) True G6441
TU8320 other upstream 3069834 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 5604625 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 7748813 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 9534825 46306926 ~ 46307319 (-) True G7868

Expression Profile