RNA id: AMCG00004198


Basic Information

Item Value
RNA id AMCG00004198
length 2856
RNA type mRNA
GC content 0.40
exon number 11
gene id AMCG00004198
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37529762 ~ 37545788 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttgcagaatcccaccgatcccattggtgcagcagCGCAgcactgcggacatctgcgcaacacgaaCGCGTCCATTGGTGCAAAGGTGCAGATCTGTCCACACCTGCGGAAATGTGCACTACAAGAATGCGACCATGATGCCTACCGTCCATAATAGTATCACACCGAGTGCATCTCAGGGTGTTTAAAGTGCACGTACATTGTTTTGCTACGAAGAGGTTACGAGTTTCAAGGGGGCTTGCCAATTGTGTAGCGGGGAAATGGGGAACAGCTGGAGTAACTCCCTGCAAATCCCACGTGGAAAAGGCCCAAATGAAGTAGGGTGCACAGACCTCATGATGGATCACACAGTTCAGGGAACCTTTTTTCGTCTGTACTACCCTTGTGAAACATCAGCAGGTTATGAAAATCCACCGTGGATTCCCAAAAAAGAATACTTATATGGGCTTGCTGACTTTCTGAAAAAGAACAGAAGTCTAATTGAAAAGGTTTTTAATTACTTCTATGGATCATTTACTGTTCCTGTTGCATGGAATGCACCATTTAAGCCTTCAGGCAAATATCCAGTGATTATTTTCTCTCATGGACTGGGAGCTTTCAGGTCTCTTTACTCAGGTATTTGCACAGAAATTGCATCCCAGGGTTTTATTGTGGCTGCTGTGGAACACAGagATGGATCCTCTTCAGCTACATATTATTACAAAGACAAATCATCTACAGAAAACTCCTCCTCTTCAGTTAGTAACCTTGAAGAGACGTGGCTGTATTACAGAGCTCTGCAACCTACTGAACCGGAATTCCAACTCCGGAACAAACAGGTGCAACAGAGAGCTAATGAATGCATTAAGGCTTTGAATCTTCTCACAGATATAAATACAGGAAGCTCAGTGAACAATGTGCTGCGGCTGCCATTTGATTGGTCTAAGTTAAAGGGCTCCATGGACTTGTGTAAGACTGCAGTGATGGGGCATTCCTTCGGGGGGGCTACAGTTATCGAATCTCTAAGCAAGGAGCCTAAATTCAAATGTGGTATTGCTCTGGATGCGTGGATGTTTCCATTGAATGATGACGTGTATCCAAGAGTGAACCAACCCATACTGTTCATCAACTCTGAGAAGTTTCAATGGGCTGGAAATATCATTAGGATGAAGAAGCTTGATTCCACAACCATCCAGAGGAAAATGATAACCATCAGGGGATCTGTGCACCAGAGCTTTCCAGATTTCACCTTTCTTACAGGGCCATGGATTGGAAAGATCTTAAAGCTGAAGGGAGAAATCAATCCCCAGATAGCTCTGGATCTCTCTAACAAAGCAACTCTAGCATTCCTGCAGAAACACTTAAAACTTGAAAATGACTTCAATCAATGGGACCCTCTAATTGATGGTGAGGACGATCATCTTATTCCAGGCACAAATATAAATTTGCTTCAGTCAAATGACTCTGCATAGAGGGAGACTGAATAGGAGCAGTGCTGCCTTTCAAGTACAAAACCAGCACAAGGAAAAGGACCATATTTTCAACCAGTGACACTAGAGTGGGACTTCCATTCAGCACATACCTCAAGAACTTATTCTGTGACAGTGTCTAATGCTGTGAACTACTCCTAGTTGAAGTATCCTTTATATCAGTCATAGTTTTCCTTACACATGAAGTAGCTACATTCAAGCTAGTagtcaaaataaactaattttagAGACAGTCAAACCAATTCATGGAAATCAGAATCCTAGTTACATATTCTGTTTTCCAACTGTACAAATAAAGGGCATTGATGGTGCattgcaaacaaataaactaaggAAAAGTAGAGGCCAAGTCTAAATAAAGTGTGATTAGGTAGCCTTCAATGAACGTACTGCTTTAAATTGGTGTTAAGTCAGTGTCTTTAAGAACCCTCAGTATTTTAAAGGGTGTATGTTCAGTGCTTCCATTCCACACATCAGATGTTGGTCTGTACTGAACCATGTTTGTGTATCATAAACACCTGTTCCCAGACAACGGTTAACTAAACCAGGTTGCATGTGGAGATTAACAATAACTAAATACCAGTATAACTGCTTAttggtttttaaaaaaatatatattttgtactagTCTTCAAAGCTATAACAAAGTTTGTTATTCTCCAGCAGTAGTGTACATGTACAGGGTCATGCTAGAAACATACTTATGGAGACAATCATGATggaataaggattttaaaagtattccgcttttttttttttgtacaggaCAATGTGATGGGAGAAGCTTATCAGTGTTACATaagatgtaaaatatgtattactggtGTAACACTAATCTATTTCCAACTGCAGGCACTCAGTGGATTTTCAGTGTAGTTCCCAGATAAAGACTTCACACTATATTATCTGCTGCACAGTTTTCTCCTGCTTGTAAAATAACACCTACTGTACTATGCTTTATAAACATGCCCCCAGGTGAAGTTTAGAGGTTCTGTATGTGCAGTTCCATGCTATTGACAAAGTGCCACTACACATTTGCCATTTTCAGAACCAAATGTACATAACAGCTTGTGAAATCTTCAGTTAACACTACAGTGTATTCATATGCAGTACACATTTAGAGATTTTCAATGGTAAAAGGTATTGCATATGTTTCTACTactttttaagtttaatattaTGCCTCATTTTGAGGAGAAAAAACCAAGAAATTCATAAACCTGATGTCAGAAACAATTCTATGTAAGGcaactgtattgttttaaatctaaaataaaacatgaaaaccttGAAAAGATGGGATGACTCATTAAATTGTATACTAAAGTAACTGCACGTGTACAAATACTGCTGTACACAGAgaaaagtgtaataaaatactTATGGC

Function

GO:

id name namespace
GO:0016042 lipid catabolic process biological_process
GO:0003847 1-alkyl-2-acetylglycerophosphocholine esterase activity molecular_function

KEGG:

id description
K01062 PLA2G7, PAFAH; platelet-activating factor acetylhydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7929 lncRNA upstream 13264 37514882 ~ 37516498 (+) True G6471
TU7873 lncRNA upstream 185317 37344061 ~ 37344445 (+) True G6428
TU7870 lncRNA upstream 188748 37337526 ~ 37341014 (+) True G6427
TU7861 lncRNA upstream 211616 37315645 ~ 37318146 (+) True G6421
TU7844 lncRNA upstream 264258 37158176 ~ 37265504 (+) True G6405
TU7999 lncRNA downstream 298721 37844509 ~ 37847720 (+) True AMCG00004210
TU8059 lncRNA downstream 709441 38255229 ~ 38255483 (+) True G6573
TU8071 lncRNA downstream 870810 38416598 ~ 38418776 (+) True G6585
TU8073 lncRNA downstream 920608 38466396 ~ 38466643 (+) True G6586
TU8085 lncRNA downstream 1070456 38616244 ~ 38616464 (+) True G6598
AMCG00004205 mRNA upstream 44130 37478830 ~ 37485632 (+) True AMCG00004205
AMCG00004206 mRNA upstream 51075 37476289 ~ 37478687 (+) True AMCG00004206
AMCG00004199 mRNA upstream 84475 37427449 ~ 37445287 (+) True AMCG00004199
AMCG00004197 mRNA upstream 111815 37394102 ~ 37417947 (+) True AMCG00004197
AMCG00004193 mRNA upstream 298554 37198923 ~ 37231208 (+) True AMCG00004193
AMCG00004209 mRNA downstream 21545 37567333 ~ 37570266 (+) True AMCG00004209
AMCG00004208 mRNA downstream 25015 37570803 ~ 37607222 (+) True AMCG00004208
AMCG00004210 mRNA downstream 286835 37832623 ~ 37846771 (+) False AMCG00004210
AMCG00004215 mRNA downstream 543075 38088863 ~ 38186137 (+) True AMCG00004215
AMCG00004216 mRNA downstream 667594 38213382 ~ 38220095 (+) True AMCG00004216
TU7800 other upstream 529604 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 638016 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 755239 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 1254832 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 1763582 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 3913788 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 4666722 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 5142991 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 8416222 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 10601100 48146888 ~ 48147156 (+) True G7999

Expression Profile