RNA id: AMCG00004200


Basic Information

Item Value
RNA id AMCG00004200
length 6861
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00004200
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37546375 ~ 37555523 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTTCGATTCCTGGCCTCCCAACACCAGGCTCAAAAATTACGGTTCACCTTACCAGGGTAAATCTAAATCCACTTTGTGTTCTGGTGGAACTATGGGCTAACTTTGATAAAGAGAAAAAGTCTGAATATCAGCAAATGAGAGCAGAAATTCAGTTTCCCAAGGAAAAATTTAAAGATGCAGAGGGAAATCCAGGAGACTTATGCCTGGTACAAATACTTGAAACATGGTACAGAGCTAGGGTCGTCTCAAGAAATGGTCCAGATTATAATGTGTTCCTTATTGACGAAGGAAGAACTCTTGCTGTTGGAGCATATAATTTAGCATGGGGTCACAATATCTTTTTCCACCTGCCTCCTGAGGTAGAATTCTGTGTTCTTGCCAATATTTTACCATTGTCACCTGAGAACAAATGGTCTCCAATGGCATTAGAGTTCCTGAAATCTCTCTGTGGTAGAACAGTTGAAGGATATGTTCAAGATGTGCTCGTACCCCATAGAGCATTCCTCATTGACATTCCCAGTATATCCAAACAGATGTACGAAATGGGATTTGCTAAGAAGTTGTCCAGTGAAATGTTTAAGTTCTATGTTGAAAGATCATTACAGTCATTTACTGGCACTATGGCCTGTCCAGAATCAAATCGAATTTCTTCCCATGTACGAATTGAACCATCAGAGTCTAGTGTTGTCCACAAGAGTAAACTTGACATCAAGCAGGGTTACTTTTACCCACAGTTACAAGCAGACACCGTTGAGATGGTAACTGTTACAGAGCTAACAAACCCTCTACGTTTTTTTTGCCAGTTGAGAATTTTTTCTCAGGAGTTAAAGAAACTAACGGATCAGATGATGCAGAAATACGAAGGAAGATTAAGTGCAGAGAACATAAGACCTGAAGCTTTGGGCTTTCCATGTGCTTCTAGAGGAAGTGATGGGAAGTGGTATAGGTCAATCTTGCAGCAGGTGTTCCCATGCAAGAATCTTGTAGAGGTATTGCATGTTGACTATGGAAAGAAAGAATTTGTTCCAATTGGTAACATCAGACCATTAGCACCTGAATTCTTCAGAATGCCTGTTGTTACATACATGTGTTCCATGCTTGGGATAACTGACCAAGGTGCTGGATGGTCAGcttctcaaattgacttcctgaaGTCCTTGCTATTGCACCGTGTAGTGATTGGAAAATTTGAGTATCAGAGTTACTCAGAGGGTGTATACTATGTAACACTCTATGGAGATGATAATCTGAATTTGAATAACTTATTTGGAATGAAAGAGAAGTGTCTGATAGAATCTGAGAAACTGCATGGGGATTATGCCATTGTGAGAACCACCATAGCTCCAAAAGCTCAAACATTGTTGGGAAGCAGAGTTCAGCGGTCTTCACCAATCCCCTGTGGAACTGGCACAGAGGAAATGCTTGCAAAGACTTCAACACCAAATCTTAAACTCAACTCAACTTATGAAGCAGTTGTAGAGTATGTAATTAGCCCCTCAGAATTTTGGATTCAGACACAAGAGTATGCCATTGAATTTGACCAGCTAATGAATCACATTGTTGACCTTTATGACAATGCATCTCGAATGGAAGGTGTAATCAGAACCCCTACGGTTGGGCTGTTTTGTGTTGCCAAGTCTAAGGATGATGTGTTTTATCGGGCCATTGTCAGTGAAGTTCTAGGGGAGCAAGCAAAGGTGTATTTTGTTGATTATGGCAACACAGAAACTGTTGCGTGGTACAACCTGAAAGTTCTACCTACCAAATACCAGGAGATACCCGCTTTAGCTCTGAAGTGCTGCCTTCATGGTGTCAGGCCCAAGGATGAGAATTGGAGTCAGAATGCAATTTCTTTCTTTACAAAAGCAGTTGGAGACAAGGTGCTTCAGGTTTATACATATGCCAAGCTTCACGACAAATATGCTGTCCAATTAACAGATGCATCGGCTGAAGAAGGGAATATAAATTGCTTGATGTGTAATGCTGGTTTTGCAGAATATGAGGACGTCAAGAAATCGGTCCCCAGGCTTCAAAGAATGCCTCTCCCTATGCCCACAGTGCAAAATCAAAGCGTAAAAACACTCTTAAATGTAACCAGAGAGAGCAATCCTTGTTCTTTGCCTACCAGCATTATAGCAGGATCCGAGACCAGGACTGTCTTCAAAGAGCATTTATTTCCAATAGGGAGTAACATAGATGTTACGGTCTCTTATATTGAAAGCCCGAATGACTTTTGGTGCCAGATGTCAAAAAGTGGAGGAAGTCTTAATTTGCTGATGCAAGACATTCAGAAATACTATGCTGATTCTCCTGATACTTATCTGCCTGTTGAAGCTGCCTGCATTGCTCGGCTACCTGGAAATGGAATATGGTACAGAGCTTTAATTATCCGAAAGCATGCATCCCTAGAAGTTGATGTTTTACTCATTGATTATGGCAATACAGAGAGAGTTCCCTTGAAAGACCTACGAGCCATAAATCCAGCATTTATTCAGCTGAAAGGTCAAGCTTTTAGATGCAGCCTCTACAATTTGATTCATCCTTCGGGTCAAGATCCTTTGAAGTGGAGTGATGCTGCAATATCGGAGTTTCAGCAGTTCGTGGATTCTGCAGCTTCCTCCCACTTGGATatgaaatgtacaatttatGCAGTTATGTATGATTCCAACAAAGTGGTCTTCAACGTGGTAGACCTTGAAACACCGTTTCAGAGTGTTTGCAGCTTACTGGTTCAAAAGGGCTTAGCCCAGCGTGCCCCACTGAAAAAAGCCCCGCACCCACCTTTCCGTCTAGACACCTACTACTATTCTATGCACAATATCAAAACCGGTGGTGAGGAGGAAGTCTGTGTTACTCATGTGAAATCTGTGGGCCACTTCTATTGCCAGCTTGGGCGGAATTCTGATATGGTCGATAAACTGGCAGAGAAGGTAAACTATCTGTGCCAACAGTTGGAACGCATAGATTGTCCTCAGACATTTGGCACAGTGTGTTTTGCAAAATACTCTGATGGTCAGTGGTACAGGGGACAGATTAAATCAGTGTTTCCAAAAATCCAGGTCTATTTTGTGGACTATGGTGATATGCAAGAAGTAGATAAATCTGATCTGCTGCCAATTCCTATTGAGGCTAGTGATCTAATGTCTGTGCCAGTCCAAGCAGTTCACTGTGGATTGGTAGATGTCCCAGCAGATGTACCAAGTGATGTCAACAGCTGGTTTGAGAGTATTGTCATTGGCAAGTGTTTCAGAGCTTTAGTAGTGGCAAAAGAACCATGTGGAAAACTGATGATTGAACTCTATGATGGTAAAATGCAGCTGAATTCAAAGATCAAAGACACATTTCAAATAGAGGCTTTAAGACAAAGTGTTGCTCTTGGGTGTTCAGTTACCAAATTCCCCAGGCCTGAGACAATGGCATGCAAGACCAAAGATGAATTTAAAGCTAGGTCTCTGCCACAGATGAGTGATCttaagaacagaaaagaaaaagacattcagTCTTTTCATAAAGATGCCTGTCAGCAACCACAAAGAGAAGTGAAACAGTTCAGCAGTGTTGGAATTCAGTGGGAACCTGAAGAGGAAAGCTTTGGAGATTCTAAAAATGGACACAAGCAGCAGATTCCTCCATCAAAATCAGAGTACAGTGCAGCACCTACTGTTAAATCTGGTAGCAGTCTAAACAACCCTGAGACAAATTCACATGCTGTATCCAATTCAAAAGACCAAAGTATCTTAAGTGTGAATTCTTTGGTTATGCCTAAACTTGCAGACCTCccatcaaaatgtttaaaacctgGTCAAGTAAAGGAAGTGTATGTGTCCCATGTCAATAACCCTTCTAGCTTCTTTGTACAGCTCACAGAAGAGGAAGATGAAATCTTCTCAATCGTAGAAAAACTCAACCAAGATCTGGTATCTATTGAATTTAGGAAGTTGGAGTTGGATGATCTAGTGTGTGCAGAGTTCCCTGATGATAACTCTTGGTATCGTGCAGTTGTcaggaacacattttcaaatggcaCAGTACTTGTAGAATTCATAGACTTTGGCAATACAGCAACTATTTCGTCTTCAAAGATCTGCTGGCTTCACAAAAAATTCTTGAAAGCACCTAGGTTCAGCATTCACTGCCTACTTAATGGAGTGCAAAGTACCAATTCCAACTCTGAGTGGGGGCAGGAAGCTGGGTTGCATTTCAAACAAGCCACTGAAAATGGAGAGAAATTTACATGTAGCTTCATTAAAATTACAGGATCACTTTGGGAGGTCAGTCTTCAAGACCAGAGCACCACTTTGACAGACCACTTAATAACGAGTGGTTTTGCTGTGAATTTTGATAATGTTTCGAAGGAGCCAGAGAGTCCACAAACCTCTTCAGGAAGGGACATTTCAGAGGGTTCGGCTGTTACCCCTGAAAAGCAAATGAAGGATCCTGAAGTGCCTCCATTATGCTACACAAGGTGTGCAATTTCAGAGAATCAGACCATTGAAGTCTATGGATCTTGTCTTGTTGGCCCAGAATACTTCTGGTGTCAATATGCAAATTCAAATGATCTTCAAAGGATTGCTGAAGTGGCTGATCAAACTGGAAACAATGAGGCAGGTCACATCTGTGTTGAGGCACTCTATCCTGGGAGCCCATGTCTGGCACTGTTTTCAGAAGATGGTCACTGGTATCGTGCAGAgctaaaagcaaaaacaaaccatgCCCTGTCAATTCTGTTTGTGGATTATGGAAATGAAGTAGAAGTAGATGAAAATTGTTTAAAGTCTATGCCTTCTCCGCTGTTCAAAATTCCAACACAAGCCTTTTTATGCCAGTTAGAAGGGTTTAATCTCTCTCATGGTTCCTGGGATTCCAATGCTGCAGACAAGTTCTATGAGCTTCTTCTAGATCAGCTTTTGAATGTTACCATCCTCAAATGGGAAGATTTTGGAAATGGTGAACCTCCTAAGTTTCATGTAAAAGTTGAATGCAATGGGCAAGTTGAACAACTTGAAGATGGCAAAGTAACACAGGTTGAAATCACAAAACAAGCTTCTGGATCTGAAAAGATTCATACTGGTTTTGAGAAACAGAGTGCTGAGTCCACCAGAGAAACTTTTAAGGATGAAGCAGAAACTGAAGTAGATGAACCTTTGGTTGCAGAAACTGGTGTACAAAACACTGATGCCCAAGTGTTGCAGGCTGTCACAGAGGACCTGGAAGACCCTGAAGAGGAAACAATACATGCAGACATTGACCCCTGTGGATTATGCGATCCTCAAAGAATCGGTAACGTGGAAGTGGTTAGTCAGGCTGCCCATGTGCAAATTGATCTTCAAGGTATGGTCTCCCTCGAGGAAAGGCCAAAGTGCATTTCAGCAGGCACCGGTGAACAAATTGAAGCTACTTCTAAAGAAACTGACgaatgcaaaacattaaaaatcctCCTGGAAGAATCCAATTTGGATAAAGAAACTCCTACAATCAAACCAATAATGGACTTCCAAGGAACTGGTGTAGATCCAACAATTTCCAAGACTTTGGGATTGCAGACCTCATCTCTCCTGGAATTTCCATGTAAATTAGATGAAGCAGTTCAGGTATGCCAGCAGGCAGAAGAAAGCTTTGAGCTGTTGGATTCCCATGAAGATGAACAAGCAGAGTATAGTGACATTTATGAGGAGGTCTTCAAACAATGCTGTAGTGAACCAGTCTGTCAAGACCGTCCTGTTCCAGAAGAGGCTGGGGATGCCCCTGCTTCTATGGATGTGGTCCATGTAATGCAGGTCCAAGAAGATGCCCAAAAGACAAGAATTGAACCAGATTGTAGTGGACTGAAACGAATGGAAGAGCTATCTAGTGGCTTTGAGTGTGTTGTCTGGTCATATGTGTACAACACCTGGTGCAATGCAAGGATTCTGAAGATCTATAAAGATACAACAAAGGTATTGCTTTTGGAATCTGATGCTGAAGCTATAGTAGATTCCCGGAGCATCTGGAAAAGTGTTCCtaaagagatgcattttaaagatcAGTTCCAGGTAGAAGCACTGGAAGCCTGTGCTCCTGTTCATGTGGAGATGTGtgCCAAACTAGAAGTTGAACACATGTCAGAAGATGAGATGATAATATATGAGAGAAGCACTGAAATTCCCCTAGAGGTGTTTAAGGGGGTTCCAAAGCTGTGTTTGGAAGGTGAAGAAATGCCAGAAGACTTTGACTTCCAATAGCCGCCACATCAAAGGTTTCTGATTTAACTGGTCTGTTGAACACCTTCTGCTATCAGTCtgaccaaaaaaacaaagtatttctAGTTTGCAGGGAAATAATGCTTAGGTTGGGGGACAAGCAATACTCTGGATTTGTGGACATCTTAAAggtctataatatatattgaatataggTGTTTTCCTGACCCAAATGTTCCCCACTTTGTCCCTGAAGATACTGTGAATGCGTTTGTCACTTATGTTGTGACCtttcttttaatgaatgtaCCATAGTTGTGTCAAGGGCACTGTTGCATAATTTCTTTCCCTTGTTTGGGATAGTTCTGGGGCTTGCTTCCTCCTTCCCCTAATATTTCTGCCCTTTTAAACTATATTCTAGAGAACTGCATACAATTTTCATAAACTTGTGTAATAAGATAACTggtatgcttttttttccccatgtaaAATGCATCTATAAGTCTAATCTGAGTAGGAAAAATTAACTCCTACTGCTTTTTTCTGTGAAGTTTGTCAGCTACTTGTTTCCTTTACTTTAtgcttattttgctttaaaatatcagTAATTGGTCAAACAATGTACAGATGTTAACTttatttgcagtatttttttttttttttttttttttgttcttt

Function

GO: NA

KEGG:

id description
K18405 TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7919 lncRNA downstream 47929 37498198 ~ 37498446 (-) True G6462
TU7897 lncRNA downstream 129828 37412689 ~ 37416547 (-) True G6445
TU7900 lncRNA downstream 129828 37412689 ~ 37416547 (-) False G6445
TU7892 lncRNA downstream 164422 37349826 ~ 37381953 (-) False AMCG00004203
TU7887 lncRNA downstream 228226 37315677 ~ 37318149 (-) False G6437
TU7958 lncRNA upstream 11808 37567331 ~ 37569793 (-) True G6491
TU8060 lncRNA upstream 699486 38255009 ~ 38255371 (-) True G6574
TU8075 lncRNA upstream 910890 38466413 ~ 38466664 (-) True G6588
TU8086 lncRNA upstream 1060696 38616219 ~ 38616465 (-) True G6599
TU8161 lncRNA upstream 1371198 38926721 ~ 38927022 (-) True G6668
AMCG00004201 mRNA downstream 17612 37524779 ~ 37528763 (-) True AMCG00004201
AMCG00004202 mRNA downstream 33377 37486957 ~ 37512998 (-) True AMCG00004202
AMCG00004203 mRNA downstream 196330 37324010 ~ 37350045 (-) True AMCG00004203
AMCG00004204 mRNA downstream 258040 37278386 ~ 37288335 (-) True AMCG00004204
AMCG00004196 mRNA downstream 493602 37050001 ~ 37052773 (-) True AMCG00004196
AMCG00004207 mRNA upstream 52498 37608021 ~ 37632390 (-) True AMCG00004207
AMCG00004211 mRNA upstream 406754 37962277 ~ 37978111 (-) True AMCG00004211
AMCG00004212 mRNA upstream 521958 38077481 ~ 38088504 (-) True AMCG00004212
AMCG00004213 mRNA upstream 778750 38334273 ~ 38479940 (-) True AMCG00004213
AMCG00004217 mRNA upstream 1026231 38581754 ~ 38588893 (-) True AMCG00004217
TU7893 other downstream 177553 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 2131929 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 2582536 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 2653762 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 3410775 34132098 ~ 34135600 (-) True G5801
TU8320 other upstream 2286412 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 4821203 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 6965391 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 8751403 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 8912602 46468125 ~ 46468434 (-) True G7882

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_10476131_10483412.mRNA True 6078 mRNA 0.43 5 CI01000325 10475815 ~ 10483468 (+)