RNA id: TU7892


Basic Information

Item Value
RNA id TU7892
length 566
lncRNA type sense_over
GC content 0.49
exon number 2
gene id AMCG00004203
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37324010 ~ 37381953 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCATTCCAGCAGAACAATCTCGCGGGATTCTCCCTGCGAAATCTCGCGGAGTTTCCTGCTGTTTTGTAGATGTGTGGCAGTAAGAGTTTAAAGGCAAGTCTACGAAGGTGGAGACTTGGGGGGATAACTTCCATTGTAAATTCTTGCGAAAACATACCTCGATTCGTCTTGCTGCTGCCATCAAGTCGGAGACAAATGGCCGCACGTTGCGACATATAACGAACCGTGAACGAGTAACAAATTCAACCCCCTTATATCAAATACATAACCTGTACGTAGCTGGCGATCGGGATTGCAAACATCAGAGACAGCGCGGAGGTCCTGCCCTGAAGGACAGTATGGTTGAGGTTGTTGTGGAGTATGACTATGAAGCCCTCCATGACGATGAGCTGACGATACGACTAGGTGACGTGATAAAAAATGTCCGGAGGCTAGAAGAAGAAGGCTGGATGGAAGGAGACCTGAACGGGAAGAGGGGCTTATTCCCGGACAACTTTGTAAAGGTAAATTTCACGCCTGAGATTTTAAAGATTTTCGGTTTCCTTTTACTGGATCTAAGTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7888 lncRNA downstream 31677 37315636 ~ 37318149 (-) True G6437
TU7887 lncRNA downstream 31677 37315677 ~ 37318149 (-) False G6437
TU7821 lncRNA downstream 321582 37028028 ~ 37028244 (-) True G6384
TU7807 lncRNA downstream 428970 36912238 ~ 36920856 (-) True G6374
TU7751 lncRNA downstream 562704 36783743 ~ 36787122 (-) True AMCG00004188
TU7897 lncRNA upstream 30736 37412689 ~ 37416547 (-) True G6445
TU7900 lncRNA upstream 30736 37412689 ~ 37416547 (-) False G6445
TU7919 lncRNA upstream 116245 37498198 ~ 37498446 (-) True G6462
TU7958 lncRNA upstream 185378 37567331 ~ 37569793 (-) True G6491
TU8060 lncRNA upstream 873056 38255009 ~ 38255371 (-) True G6574
AMCG00004204 mRNA downstream 61491 37278386 ~ 37288335 (-) True AMCG00004204
AMCG00004196 mRNA downstream 297053 37050001 ~ 37052773 (-) True AMCG00004196
AMCG00004195 mRNA downstream 343875 36971391 ~ 37005951 (-) True AMCG00004195
AMCG00004194 mRNA downstream 389124 36921065 ~ 36960702 (-) True AMCG00004194
AMCG00004188 mRNA downstream 562924 36784823 ~ 36786902 (-) False AMCG00004188
AMCG00004202 mRNA upstream 105004 37486957 ~ 37512998 (-) True AMCG00004202
AMCG00004201 mRNA upstream 142826 37524779 ~ 37528763 (-) True AMCG00004201
AMCG00004200 mRNA upstream 164422 37546375 ~ 37555523 (-) True AMCG00004200
AMCG00004207 mRNA upstream 226068 37608021 ~ 37632390 (-) True AMCG00004207
AMCG00004211 mRNA upstream 580324 37962277 ~ 37978111 (-) True AMCG00004211
TU7345 other downstream 1935380 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 2385987 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 2457213 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 3214226 34132098 ~ 34135600 (-) True G5801
TU6815 other downstream 4753419 32593627 ~ 32596407 (-) True G5566
TU8320 other upstream 2459982 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 4994773 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 7138961 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 8924973 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 9086172 46468125 ~ 46468434 (-) True G7882

Expression Profile