RNA id: TU7999


Basic Information

Item Value
RNA id TU7999
length 2996
lncRNA type sense_over
GC content 0.46
exon number 2
gene id AMCG00004210
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37832623 ~ 37847720 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacatttttatatttttcaggtTCACCACAAAACACCTGAATGATGAGACAACTCCAAAAACTATTCGTGCTATGcttcagtaacatttttttttatatgaagagGATCTATGTTCTGACCTCAGAAGATGTATatgtttacataatttaaaagacTTGATGTTAATActtgtgtgtatttacatagcCATTCCCTCCACATTAATAAAACTTATAGAAAATGTACCTTTATTCTAAAACCAATTGCCAATACTATTATTTGTTGaagcacaaaataattataccTTACAGCCTTATAAACTGAAACATGCAAAACTGCTTGGcatgcaacttttttttttttttttctaatgttaTACCAATTATAAAATGAAGTTTTTCAGAAGAGTGAATTATTTTCTGTGGTTTTCTTATATTCAGGGAACTTCAGCCAAGGTAGCAAGGGTAGTGTCTTACATATTGATTTTTTCTTGGTGAGTTTTGATGTTCGTCTGGTTTTCTTCGTGGAACATAAAACTGATGGGAAAGGCATGATTGATCAATACAAAAGAAATGACCAAAATGGCCCCCAGTCCTGAAGTTAACCAGCAAATCACCTGGGTGTCCCAGTTCACATGACTGGAGTCACAGGAAGTACCAAGTTGGTCATAGTGTTTGCCTTGGTGGTGACTGGAAACTGTCCGAAGCTGATTTGCCTCTCTACTACCGAGTCCTGCTAAGAAGGAAAACGGGTGAAAATCGGAAAGCTTGCCTGGGGAAAAATATTCAGGTTTGCCAACTCtgccaaaataaatgtgcaaatgttttttcttaaacaaaggGCATGTAAATATCCACACATTGTGTTCCATTTTAAACTATTTGGTGATGGATCTAGGTTTTATTAACGTTAGCAAGCAATATTGTTGTTTcttgctttgtgtattgctgaATTGAACTTTTCTGAAGATTCGAGCTGCAGagattttaaagcacatttgaaacattttcaatatcGAAGAACAGTAACATTTACCATTTTCCTTTGCTAGGGTGGAAACCTATTTGCTACTGTAAGCATTTCTGCCAACTATACatgatttacaaattattttacagtaccTTTAATCTCAAAGGTGCGATTCCCCATACAGTTTCATGCATTGTGTGTTGCTGGAGTTAAATGTCTGTATTCTTATTTGTGCATAaggatgtgtgtattttttgctTGGCAAGGAAGTTGGGTAGCACACATTGAAATTTGATTGCGATATCAGGTTAACTAGAAGCATTTCTCTGGCCCTGATATGAACCTGtgtacctttttatttcatGCATTGTTCTCTCTAGCATTTTCTTTGAATAAATGTTGACCAAAGGGGCATTATAGATATTGTAATTTCTGAGTTAGTTTTACTTGTTTATACAAGAATGAGTGTCTTGATATGGTACAATAGTGACATCAGTATTAaccactggaaaaataaaaaattaagataTGTGATTTAGTCTTTTCAGAAGTATTGACGTTTTTATAAGCATTTCTGGAACATTGATGGGTTTGTTCAAGTCTGaattttgctttaaatgaaCGTGCTGAGATTATGAAAGCTAAGGCATTTCCAGGTAGTATCGGCCATTCACACTACAGAGTTTATTTGCTGTAACCATACTACGCAATTCTTTGTATGTTTGCAGTTTGACTATGCCATTATGCTGTGCTCTATCAAACCAATGGGGGTGGCTTCAACAATGTCTTAATTTTGCAGTGTAGCACAAATTCACAGCCAACGGCAGCGTTTCTTAGTTTAGTTTTCAGTTTCCAATGAAGGCATTAATACTCTCCGTGTTCAATCAGAAACACTCTCACTCTGATTTGTTCCcgatttttgaaaataattataggGATAGTTTAAATTTTTTCCATGATCTGCaatgacaattaattaattgtaagtCACATGTCTCTCCCTTCTTCAGAGAAATTACGGTGTAGCAGCTTGCACCCAATCCCCACAGCTGGGTCAGGGTGAAGTTTGTGCCATTACTCCTCCAGAAAGTGAAGGAATGAAAAGTAGGAATAGTCCTATTCAATTGCATAGGTTTATTATTTACTGGAGGAACACCATAACAAATAAATGCTGTATTGTAAATGGCCTTTTACAAAGACAAACATTAAAAGTTAACTACTGAATTAAAGTGACTAGTGTGGAGCACATATATTAAgaagaattaaatatataaaataccaaTGTTCTTCCAAATGTCAGTATTGAATGAAATATTTAAGTGATGCCTTTCTAAAGCCTAAAGTGTGCAAAAAGTGCTAATTGCCAgctatattaaatattcataaaatgtttttaactgacagtacagttttatttgttgtatagTTTGAGAAACTGTCCAGCTTcttgttggttttgcttttgtattgtatattatatggATGtgtgaagtgaaaataaaaactggtaCATTTTGTTGACTGGGATCTGTTTATCTTTGTCCGTTTATTGAAATGCGgctattatttttataagaaaataaaaaatggcacTGCGTCTTCATCTATTTCATGTCCACCTGGGACAGTCATGGCCACTGGTGGTCCTGGAAACACACCTCGAGAACCACTGATCTCCATGCCGGCGCCATGCGAAACGCAGCAGTTCTTGCCTTTTAACATGCATTCCAAGGAATCTACAATCAACTGCTCTGGAACACTGCAGCTAGTTTGTTTCTGAAAGTCATGCATTTCAACTTATTCCTGAGGTTTGGGGTTTGTGGTTTTCAGCAGCtaaaggaaaatgtgaaaatgagtCATCCAAACAGTCTGTGCCTCTCTCCTGTCATCGTGTGTTTACACTTGAACAGTCTGTGCCTCTCTCCTGTCATCGCATGTTTACATTTGAACAGTTCTTATTTATTGTGTGAGTTGCACATTTCCTTTATATGTAAAAAGGTCCAGTGTTGCTACTTTACAAATAGATGCATCCAATGTAATAAATCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7929 lncRNA upstream 328011 37514882 ~ 37516498 (+) True G6471
TU7873 lncRNA upstream 500064 37344061 ~ 37344445 (+) True G6428
TU7870 lncRNA upstream 503495 37337526 ~ 37341014 (+) True G6427
TU7861 lncRNA upstream 526363 37315645 ~ 37318146 (+) True G6421
TU7844 lncRNA upstream 579005 37158176 ~ 37265504 (+) True G6405
TU8059 lncRNA downstream 407509 38255229 ~ 38255483 (+) True G6573
TU8071 lncRNA downstream 568878 38416598 ~ 38418776 (+) True G6585
TU8073 lncRNA downstream 618676 38466396 ~ 38466643 (+) True G6586
TU8085 lncRNA downstream 768524 38616244 ~ 38616464 (+) True G6598
TU8105 lncRNA downstream 902194 38749914 ~ 38756252 (+) True G6617
AMCG00004208 mRNA upstream 237287 37570803 ~ 37607222 (+) True AMCG00004208
AMCG00004209 mRNA upstream 274243 37567333 ~ 37570266 (+) True AMCG00004209
AMCG00004198 mRNA upstream 298721 37529762 ~ 37545788 (+) True AMCG00004198
AMCG00004205 mRNA upstream 358877 37478830 ~ 37485632 (+) True AMCG00004205
AMCG00004206 mRNA upstream 365822 37476289 ~ 37478687 (+) True AMCG00004206
AMCG00004215 mRNA downstream 241143 38088863 ~ 38186137 (+) True AMCG00004215
AMCG00004216 mRNA downstream 365662 38213382 ~ 38220095 (+) True AMCG00004216
AMCG00004214 mRNA downstream 377836 38225556 ~ 38226811 (+) True AMCG00004214
AMCG00004218 mRNA downstream 883788 38731508 ~ 38743566 (+) True AMCG00004218
AMCG00004222 mRNA downstream 978101 38825821 ~ 38833968 (+) True AMCG00004222
TU7800 other upstream 844351 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 952763 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 1069986 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 1569579 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 2078329 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 3611856 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 4364790 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 4841059 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 8114290 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 10299168 48146888 ~ 48147156 (+) True G7999

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034759 True 729 lncRNA 0.37 5 NC_007131.7 35293205 ~ 35297542 (+)
grasscarp (Ctenopharyngodon idella) TU537987 True 1383 lncRNA 0.34 4 CI01000325 10386043 ~ 10388152 (-)